Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1264
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0660 - 27017692-27017928,27018101-27018250,27018337-270184... 37 0.013
02_05_0128 - 26059348-26059437,26059553-26059759 36 0.023
02_05_0131 + 26098459-26098668,26098788-26098863,26101972-261021... 33 0.22
11_01_0550 + 4355857-4356051,4357287-4357355,4357429-4357561,435... 31 0.66
12_01_0497 + 3946179-3946322,3947274-3947342,3948733-3948829,395... 31 1.1
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 8.1
01_06_0921 - 33017892-33018953 28 8.1
>04_04_0660 -
27017692-27017928,27018101-27018250,27018337-27018427,
27018512-27018672,27018783-27019015,27019119-27019325,
27021411-27021507,27021636-27021677,27021802-27022056
Length = 490
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 403 VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNAWWR 519
V + R + G TR +EWR+ QL+ LLR+ E + A +R
Sbjct: 30 VAELRAAYESGRTRSLEWRQSQLRGLLRLLAEEEAAAFR 68
>02_05_0128 - 26059348-26059437,26059553-26059759
Length = 98
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 480 VKNVRGKPKRMVEALHKDLRRSKMAAILLEVDYLINDLRNTLHYLDEWTKPE 635
++ + + + +ALH DL + ++ + EV L +RNTL L +W PE
Sbjct: 40 IRMITEEEDAIFDALHDDLGKHRVESFRDEVGVLAKSVRNTLQNLKKWASPE 91
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 403 VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNA 510
V R+ + G T+ +EWR+ QL L+RM E ++A
Sbjct: 14 VAGVREEYESGRTKELEWRKAQLGGLIRMITEEEDA 49
>02_05_0131 +
26098459-26098668,26098788-26098863,26101972-26102178,
26102311-26102435,26102740-26102900,26102977-26103067,
26103161-26103310,26103396-26103632
Length = 418
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 403 VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQ 504
V R+ + G T+ +EWR+ QLK L+R+ + +
Sbjct: 15 VSGLREVYESGRTKDLEWRQSQLKALIRLLTDKE 48
>11_01_0550 +
4355857-4356051,4357287-4357355,4357429-4357561,
4358248-4358454,4358601-4358716,4358814-4358918,
4359008-4359180,4359273-4359363,4359682-4359831,
4359928-4360173
Length = 494
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 423 FQSRHNQADRMAPSAAQEFVKNVRGKPKRMVEALHKDLRRSKMAAILLEVDYLINDLRNT 602
F+S +A + + V+ V + + +ALH DL + +M + L E+
Sbjct: 17 FRSGRTRAAEWRAAQLRGIVRMVEEREGDISDALHSDLAKPRMESYLHEISLAKAACTFA 76
Query: 603 LHYLDEWTKPE 635
L L W KPE
Sbjct: 77 LKGLKNWMKPE 87
>12_01_0497 +
3946179-3946322,3947274-3947342,3948733-3948829,
3951827-3952033,3952149-3952264,3953189-3953293,
3953380-3953552,3953647-3953737,3953869-3954018,
3954482-3954724
Length = 464
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 403 VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEE 498
V R F G TR EWR QL+ +LRM E
Sbjct: 13 VAALRGRFAAGGTRGAEWRAAQLRGILRMAAE 44
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 27.9 bits (59), Expect = 8.1
Identities = 30/112 (26%), Positives = 54/112 (48%)
Frame = +2
Query: 239 LRYFRGT*RVTFLEKTF*FLKVWQQ*ILNKESQNSR*QSGILQHPNKRRCQLLRPSKKLE 418
L++ G ++FLE + LK++++ ++ K +Q R + L+ +K+ + RP E
Sbjct: 1052 LQHKMGCVILSFLEVS---LKLYKRYVI-KRNQRKRQREEDLKKEDKKTSEK-RPKTNDE 1106
Query: 419 TLSIAAQPGR*NGAVSSSRIC*ECTRKTKTHGGGPTQGSQTKQNGSHSTRSR 574
TLS + G N S I + + T G P + +TK N HS ++
Sbjct: 1107 TLS---ESGPSNQGESVEMI--KAGKGTAHSAGQPNKDDETKMNAGHSAAAQ 1153
>01_06_0921 - 33017892-33018953
Length = 353
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 304 VATINIKQG-ISKFKMTVGNLTTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNL 480
VA + I+ G ++ TVG + +K S E V++ + + P EW + L
Sbjct: 97 VAPVGIQPGGVADEGETVGAIVDEMEKEDSDNERVEEGDSSDDETDINPAEWASEDFSGL 156
Query: 481 LRMYEENQNAW 513
+ + EE+ W
Sbjct: 157 I-VSEEDSVRW 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,266
Number of Sequences: 37544
Number of extensions: 289888
Number of successful extensions: 689
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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