Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1264
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 28 6.2
SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0) 28 8.3
>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +3
Query: 510 MVEALHKDLRRSKMAAILLEVDYLINDLRNTLHYLDEWTKPEHPPKGFVNILDEVVIYND 689
+V AL KDL + + ++ E+ ND L L EW KP+ G VN +D I N+
Sbjct: 12 IVAALKKDLCKPRQETVIAEILLAKNDAILALEKLSEWMKPQPVETGIVNKMDTCYIKNE 71
Query: 690 P 692
P
Sbjct: 72 P 72
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 382 TMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNAWWRPYTRISDEAKWQ-P 558
++S + VQ D + T RP+ RR L EE + + P + +E W+ P
Sbjct: 1473 SLSGIDTVQLTTDPRSTTTIRPLSERRSSEPTLPSYIEERDSGYLEPKVTLYEELPWELP 1532
Query: 559 FY 564
Y
Sbjct: 1533 SY 1534
>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 424 FNRGTTRPIEWRRQ--QLKNLLRMYEENQNAWWRPYTRISDEAKWQPFYSKSTT*SMI*G 597
FN T P+ R K ++ + Q +W T + WQ F+ KS
Sbjct: 575 FNPDTKDPVTIRLPLPNAKEIMSQFGGQQLTFWTSSTLEGEPPVWQQFHPKSVYIDTEDP 634
Query: 598 TLCIIWMS 621
TLC ++ S
Sbjct: 635 TLCSVYFS 642
>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 623 PLIQIMQSVPQIIDQVVDFE*NGCHFASSEILV*GLH-HAFWFSSYILNKFLSC*RRHSI 447
P I Q V +DQVVDF H + G+H HA +++L + +C R +I
Sbjct: 94 PWIPARQKVQTYVDQVVDF---AHHLYVPDQEESGVHQHAREDHNHVLKRITACLRARNI 150
Query: 446 GLVVP 432
+ +P
Sbjct: 151 PVEIP 155
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 21 LCRLCGSCSVRNHCLIHSLYTLCKQL--MYISAC 116
LCR C +C R ++H +Y + + M++S C
Sbjct: 324 LCRQCATCLCRYVAIVHHVYVVMSPVCTMFMSLC 357
>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +1
Query: 397 EAVQKARDTFNRGTTRPI--EWRRQQLKNLLRMYEENQNAWWRPYT 528
E + RD G + + +W + ++ Y+EN WW P T
Sbjct: 623 EITKLQRDVTQHGLSVIVIADWYNVDVMKKIKFYDENTRQWWMPDT 668
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +3
Query: 183 KLQQQKCIRSECVTKTKLDLGTLEAHRELLFWKKLFNFLRCGNNKY*TRNLKIQDDSRES 362
K + +K IR L G + ++++ L WK F + G+N +RN++ ++ R+
Sbjct: 484 KPENRKAIRGSWGLPN-LQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDY 542
Query: 363 YN---IQTKD 383
I TKD
Sbjct: 543 QREKCIHTKD 552
>SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 528 KDLRRSK--MAAILLEVDYLINDLRNTLHYLDEWTKPEHPPK 647
KDL S + ++++ YL ++ + + DEW K E PPK
Sbjct: 82 KDLSSSDVFLISVMVASKYLYDEGEDEEVFNDEWAKAEDPPK 123
>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 454 WRRQQLKNLLRMYEENQNAWWRPYTRISDE-AKWQ 555
++ + L N ++Y E +N W+ YT+ +++ +W+
Sbjct: 1199 YKNEPLVNAWKIYNETKNKWYVVYTKTAEQKERWR 1233
>SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1846
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +1
Query: 262 ESYFFGKNFLIS*GVATINIKQG-ISKFKMTVGNLTTSKQ--KTMS-AAEAVQKARDTFN 429
ES+ K+ L + ++ Q + K K +GNL SKQ K MS +++ + + +
Sbjct: 1694 ESFSRAKSLLNPKEIPEVSYAQHYVKKLKANIGNLFKSKQTNKKMSIGLKSLNGMKTSSD 1753
Query: 430 RGTTRPI--EWRRQQLKNLLRMYEEN 501
R P+ E R Q+ LR Y+++
Sbjct: 1754 RREEEPLLMESERHQITAKLRKYQDD 1779
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,834,852
Number of Sequences: 59808
Number of extensions: 349597
Number of successful extensions: 1134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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