Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1264
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016452-9|AAO26003.1| 494|Caenorhabditis elegans Aldehyde dehy... 51 7e-07
AF016452-8|AAM45357.1| 493|Caenorhabditis elegans Aldehyde dehy... 51 7e-07
AF016452-7|AAB66022.2| 493|Caenorhabditis elegans Aldehyde dehy... 51 7e-07
AF039039-7|AAB94178.1| 437|Caenorhabditis elegans Aldehyde dehy... 39 0.004
AF040659-1|AAK39389.1| 332|Caenorhabditis elegans Hypothetical ... 30 1.8
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 28 5.5
>AF016452-9|AAO26003.1| 494|Caenorhabditis elegans Aldehyde
dehydrogenase protein4, isoform c protein.
Length = 494
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/92 (28%), Positives = 45/92 (48%)
Frame = +3
Query: 417 RHFQSRHNQADRMAPSAAQEFVKNVRGKPKRMVEALHKDLRRSKMAAILLEVDYLINDLR 596
++F++ + + + K + + + EA+ KDLRR + +LE+ I ++
Sbjct: 12 KYFRTGETKPVKFRKQQLLKLKKFIEENREALSEAVWKDLRRRHESTEILEIGMTIQEID 71
Query: 597 NTLHYLDEWTKPEHPPKGFVNILDEVVIYNDP 692
L +D+W KP H K F LD+ VI DP
Sbjct: 72 YFLKNIDDWVKPTHVEKTFTTALDKPVIEKDP 103
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 385 MSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNA 510
M+ E V+ R F G T+P+++R+QQL L + EEN+ A
Sbjct: 1 MAFTELVETQRKYFRTGETKPVKFRKQQLLKLKKFIEENREA 42
>AF016452-8|AAM45357.1| 493|Caenorhabditis elegans Aldehyde
dehydrogenase protein4, isoform b protein.
Length = 493
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/92 (28%), Positives = 45/92 (48%)
Frame = +3
Query: 417 RHFQSRHNQADRMAPSAAQEFVKNVRGKPKRMVEALHKDLRRSKMAAILLEVDYLINDLR 596
++F++ + + + K + + + EA+ KDLRR + +LE+ I ++
Sbjct: 12 KYFRTGETKPVKFRKQQLLKLKKFIEENREALSEAVWKDLRRRHESTEILEIGMTIQEID 71
Query: 597 NTLHYLDEWTKPEHPPKGFVNILDEVVIYNDP 692
L +D+W KP H K F LD+ VI DP
Sbjct: 72 YFLKNIDDWVKPTHVEKTFTTALDKPVIEKDP 103
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 385 MSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNA 510
M+ E V+ R F G T+P+++R+QQL L + EEN+ A
Sbjct: 1 MAFTELVETQRKYFRTGETKPVKFRKQQLLKLKKFIEENREA 42
>AF016452-7|AAB66022.2| 493|Caenorhabditis elegans Aldehyde
dehydrogenase protein4, isoform a protein.
Length = 493
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/92 (28%), Positives = 45/92 (48%)
Frame = +3
Query: 417 RHFQSRHNQADRMAPSAAQEFVKNVRGKPKRMVEALHKDLRRSKMAAILLEVDYLINDLR 596
++F++ + + + K + + + EA+ KDLRR + +LE+ I ++
Sbjct: 12 KYFRTGETKPVKFRKQQLLKLKKFIEENREALSEAVWKDLRRRHESTEILEIGMTIQEID 71
Query: 597 NTLHYLDEWTKPEHPPKGFVNILDEVVIYNDP 692
L +D+W KP H K F LD+ VI DP
Sbjct: 72 YFLKNIDDWVKPTHVEKTFTTALDKPVIEKDP 103
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 385 MSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNA 510
M+ E V+ R F G T+P+++R+QQL L + EEN+ A
Sbjct: 1 MAFTELVETQRKYFRTGETKPVKFRKQQLLKLKKFIEENREA 42
>AF039039-7|AAB94178.1| 437|Caenorhabditis elegans Aldehyde
dehydrogenase protein 5 protein.
Length = 437
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 385 MSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNA 510
MS V+ R FN G T+P E+R++QL L ++ EEN+ A
Sbjct: 1 MSLHRIVEAQRAYFNTGATKPAEFRKEQLLQLKKLIEENRAA 42
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 510 MVEALHKDLRRSKMAAILLEVDYLINDLRNTLHYLDEWTKPEHPPKGFVNI-LDEVVIYN 686
+ E + KDLRR +E+ + ++ L LD+W KP + + D+ I
Sbjct: 43 LTEVVWKDLRRRHEVTEPMELGGSLEEIAYYLKNLDDWMKPTYVEPTVATLPTDKPYIVK 102
Query: 687 DP 692
DP
Sbjct: 103 DP 104
>AF040659-1|AAK39389.1| 332|Caenorhabditis elegans Hypothetical
protein ZK484.3 protein.
Length = 332
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 322 KQGISKFKMTVGNLTTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRM-YEE 498
K+ ISK T N+T++ + +AA A +K + + +T+P +Q L+N +M
Sbjct: 226 KKAISKKPPTTTNVTSTSDSSAAAAAAKKKKKPVVPKLSTKP---TKQYLENEKQMRLMA 282
Query: 499 NQNAWWRPYTRISDEAKWQPFYS 567
Q ++ + + PFYS
Sbjct: 283 TQKCTYKEPKSLEKRIYFIPFYS 305
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 485 ECTRKTKTHGGGPTQGSQTKQNGSHS 562
EC RK + G PT+ + TK+NG S
Sbjct: 548 ECRRKVEATTGEPTKETSTKKNGLKS 573
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,117,840
Number of Sequences: 27780
Number of extensions: 271932
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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