Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1264
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.90 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.90 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.90 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.8  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 402 RPKSSRHFQSRHNQADRMAPSAAQEFVKNVRGKPKRMV 515
           RPK  +    +  Q D  AP+A +  V+ V  KP+ MV
Sbjct: 365 RPKLRKDMYEKMVQVDPTAPNAEERRVQGVT-KPRYMV 401


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 402 RPKSSRHFQSRHNQADRMAPSAAQEFVKNVRGKPKRMV 515
           RPK  +    +  Q D  AP+A +  V+ V  KP+ MV
Sbjct: 280 RPKLRKDMYEKMVQVDPTAPNAEERRVQGVT-KPRYMV 316


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 402 RPKSSRHFQSRHNQADRMAPSAAQEFVKNVRGKPKRMV 515
           RPK  +    +  Q D  AP+A +  V+ V  KP+ MV
Sbjct: 599 RPKLRKDMYEKMVQVDPTAPNAEERRVQGVT-KPRYMV 635


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 417 RHFQSRHNQADRM 455
           RHFQ +H Q+D +
Sbjct: 23  RHFQDKHEQSDTL 35


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 148 FLH*IKIILRLSNYSNKSVSEV 213
           F+H I +IL +  YSN+++++V
Sbjct: 9   FIHSIFLILIIFIYSNETIAQV 30


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 148 FLH*IKIILRLSNYSNKSVSEV 213
           F+H I +IL +  YSN+++++V
Sbjct: 9   FIHSIFLILIIFIYSNETIAQV 30


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 636 HPPKGFVNILDEVVIYNDP 692
           +PPKG  +   +V++ N P
Sbjct: 332 NPPKGAADFTAQVIVLNHP 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,362
Number of Sequences: 438
Number of extensions: 3437
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)