Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1264
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34240.2 68417.m04866 aldehyde dehydrogenase (ALDH3) similar ...    39   0.003
At4g34240.1 68417.m04867 aldehyde dehydrogenase (ALDH3) similar ...    39   0.003
At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein c...    35   0.045
At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)...    31   0.55 
At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)...    31   0.55 
At5g19660.1 68418.m02339 subtilase family protein contains Pfam ...    30   1.7  
At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r...    29   2.9  
At3g62900.1 68416.m07066 expressed protein ; expression supporte...    28   6.8  
At2g46200.2 68415.m05745 expressed protein low similarity to ES1...    27   8.9  
At2g46200.1 68415.m05744 expressed protein low similarity to ES1...    27   8.9  

>At4g34240.2 68417.m04866 aldehyde dehydrogenase (ALDH3) similar to
           aldehyde dehydrogenase [Arabidopsis thaliana]
           gi|17065876|emb|CAC84903; contains Pfam profile PF00171:
           aldehyde dehydrogenase (NAD) family protein; identical
           to cDNA aldehyde dehydrogenase (ALDH3 gene) GI:17065875,
           aldehyde dehydrogenase [Arabidopsis thaliana]
           GI:17065876
          Length = 390

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +1

Query: 391 AAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQ 504
           AA  V + R  FN G T+  EWR  QL+N+ RM +E +
Sbjct: 75  AALLVDELRSNFNSGRTKSYEWRISQLQNIARMIDEKE 112


>At4g34240.1 68417.m04867 aldehyde dehydrogenase (ALDH3) similar to
           aldehyde dehydrogenase [Arabidopsis thaliana]
           gi|17065876|emb|CAC84903; contains Pfam profile PF00171:
           aldehyde dehydrogenase (NAD) family protein; identical
           to cDNA aldehyde dehydrogenase (ALDH3 gene) GI:17065875,
           aldehyde dehydrogenase [Arabidopsis thaliana]
           GI:17065876
          Length = 550

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +1

Query: 391 AAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQ 504
           AA  V + R  FN G T+  EWR  QL+N+ RM +E +
Sbjct: 75  AALLVDELRSNFNSGRTKSYEWRISQLQNIARMIDEKE 112


>At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein
           contais aldehyde dehydrogenase (NADP) family protein
           domain, Pfam:PF00171
          Length = 484

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = +1

Query: 397 EAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQN 507
           E++++ R+TF  G TR ++WR+ Q+  +  M ++N++
Sbjct: 10  ESLREMRETFASGRTRSLKWRKAQIGAIYEMVKDNED 46


>At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)
           similar to aldehyde dehydrogenase ALDH [Craterostigma
           plantagineum] gi|17065918|emb|CAC84900
          Length = 484

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 376 QKTMSAAEA---VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQ 504
           +K   +AEA   V + R +F+ G TR  EWR  QLK L+ + + ++
Sbjct: 4   KKVFGSAEASNLVTELRRSFDDGVTRGYEWRVTQLKKLMIICDNHE 49


>At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)
           similar to aldehyde dehydrogenase ALDH [Craterostigma
           plantagineum] gi|17065918|emb|CAC84900
          Length = 484

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 376 QKTMSAAEA---VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQ 504
           +K   +AEA   V + R +F+ G TR  EWR  QLK L+ + + ++
Sbjct: 4   KKVFGSAEASNLVTELRRSFDDGVTRGYEWRVTQLKKLMIICDNHE 49


>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
           profile: PF00082 subtilase family
          Length = 1038

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +1

Query: 397 EAVQKARD-TFNRGTTRPI--EWRRQQLKNLLRMYEENQNAWWRPYT 528
           E ++K RD   N G    +  EW        +R +++N  +WW P T
Sbjct: 700 EEIEKLRDDVINTGLGLVVFAEWYNVDTMVKMRFFDDNTRSWWTPVT 746


>At3g54430.1 68416.m06021 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 183

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 3   NVVNEQLCRLCGSCSVRNHCLIHSLYTLCKQLMY 104
           N V E++CR CG+   +  CL     T CK   Y
Sbjct: 34  NTVGEKVCRDCGN-RAKKECLFERCRTCCKSRGY 66


>At3g62900.1 68416.m07066 expressed protein ; expression supported
           by MPSS
          Length = 1401

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +1

Query: 412 ARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNAWWRPYTRISDEAKWQPFYSK 570
           A DT N  +T  I+ R+ +  +  R+Y EN+N   R   R+  E K +P YS+
Sbjct: 801 ASDTGNSNSTGGIKKRKLRESHGSRIYSENEN-HERKKARVRKEEK-EPSYSQ 851


>At2g46200.2 68415.m05745 expressed protein low similarity to ES18
           [Mus musculus] GI:4416181
          Length = 382

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 337 KFKMTVGNLTTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQL 471
           K K ++ N    K+K   AAE   K  + F +      EWR +++
Sbjct: 135 KMKKSIRNKLWKKRKRRCAAEMRAKEPERFEQADREADEWREKEM 179


>At2g46200.1 68415.m05744 expressed protein low similarity to ES18
           [Mus musculus] GI:4416181
          Length = 382

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 337 KFKMTVGNLTTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQL 471
           K K ++ N    K+K   AAE   K  + F +      EWR +++
Sbjct: 135 KMKKSIRNKLWKKRKRRCAAEMRAKEPERFEQADREADEWREKEM 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,353
Number of Sequences: 28952
Number of extensions: 241912
Number of successful extensions: 664
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)