Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1262
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.1  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   5.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   8.9  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/28 (25%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 132 GFRLLCY-STKPGWWVYRIDLKIAIWTG 212
           GF ++ + +T PG+W++   ++  +  G
Sbjct: 586 GFTIIRFKATNPGYWLFHCHIEFHVEVG 613


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 227 CPTWSSRPYCNFEIYSINPPTW 162
           C  ++  PY NFE +S+    W
Sbjct: 18  CRLFALVPYYNFEKFSLEHQLW 39


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 648 EHHHSYFSIYQKVFQITVIRL 710
           +  HS++ IY+  + I  + L
Sbjct: 34  QERHSFYKIYKYTYNIVAVSL 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,629
Number of Sequences: 336
Number of extensions: 4879
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)