Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1262
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 75 9e-15
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 73 5e-14
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 73 7e-14
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 26 5.6
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 26 7.4
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase... 26 7.4
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 9.8
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 75.4 bits (177), Expect = 9e-15
Identities = 32/74 (43%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Frame = +2
Query: 509 KMRK-RGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIPES 685
KMRK R I ++++A ++ +G+ HIIT+DLH ++QGFF PVDNL A P + ++I +
Sbjct: 99 KMRKYRDAITARMVANLLTVAGVDHIITLDLHASQMQGFFTRPVDNLYAEPNIAEWIRRN 158
Query: 686 IPDYRNSVIVARNP 727
+ D+ +V+V++NP
Sbjct: 159 VDDWEEAVVVSKNP 172
Score = 74.9 bits (176), Expect = 1e-14
Identities = 34/63 (53%), Positives = 47/63 (74%)
Frame = +3
Query: 324 NRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSK 503
N ET VEI +S+R K+++I+Q+G+ VN+++MELLI+ ACK SA I V+PY PYSK
Sbjct: 37 NGETSVEIRESVRDKDVFILQSGSSTVNDSLMELLIIISACKGGSAKRITAVMPYFPYSK 96
Query: 504 Q*K 512
Q K
Sbjct: 97 QSK 99
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 72.9 bits (171), Expect = 5e-14
Identities = 32/72 (44%), Positives = 51/72 (70%)
Frame = +3
Query: 297 GGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLIMAYACKTSSASSIVG 476
G +V +NRET V I +S+R ++++I+QTG +N+++MELLIM AC+++SA I
Sbjct: 30 GKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGSINDHLMELLIMINACRSASARRITA 89
Query: 477 VIPYLPYSKQ*K 512
+IP PY++Q K
Sbjct: 90 IIPCFPYARQDK 101
Score = 71.3 bits (167), Expect = 2e-13
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +2
Query: 509 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIPESI 688
K + R I ++L+A M+ +G +HIITMDLH +IQGFF+ PVDNL A P +L+YI E+I
Sbjct: 102 KDKSRAPITARLVANMLQTAGCNHIITMDLHASQIQGFFNVPVDNLYAEPSVLRYIRENI 161
Query: 689 PDYRNSVIV 715
N ++
Sbjct: 162 DTTVNPTVI 170
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 72.5 bits (170), Expect = 7e-14
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = +2
Query: 542 LLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIPESIPDYRNSVIVA 718
L+A ++ SG HIITMDLH + QGFFD PVDNL P L YI +IP+Y N+VIV+
Sbjct: 135 LVADLLMCSGADHIITMDLHDPQFQGFFDIPVDNLFGRPLLKHYISLNIPNYHNAVIVS 193
Score = 70.1 bits (164), Expect = 3e-13
Identities = 35/96 (36%), Positives = 57/96 (59%)
Frame = +3
Query: 219 RRTLLF*VETHI*IS*FDCQPPRVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTK 398
+ ++F E+H ++ C+ + G + +N ET V I S+RG ++YI+ +
Sbjct: 2 KNLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPASG 61
Query: 399 DVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSKQ 506
VN+++MELLIM ACKT+SA + V+P PYS+Q
Sbjct: 62 QVNDHLMELLIMISACKTASAKKVTAVLPVFPYSRQ 97
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 455 GSLTSVGHYKQFHYVV 408
GS HYKQ+HYVV
Sbjct: 286 GSRLKHSHYKQYHYVV 301
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 71 LNKLFSTFTNIIIKKPSGYSW-LQVIMLLNKTRLV 172
++K FS+ N+I++K S YS+ ++ NKT +V
Sbjct: 227 ISKPFSSARNLILEKVSNYSFDTSMVSSPNKTHVV 261
>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 216 EFPSILQF*DLFDKPTNLVLLSNIIT*SQLY 124
E P+IL D F+ NL L++ + T +L+
Sbjct: 87 EHPNILHLVDFFETVNNLYLITELATGGELF 117
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 71 LNKLFSTFTNIIIKKPSGY 127
L L+S FT++ IK P G+
Sbjct: 24 LKSLYSDFTSLFIKNPEGF 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,564,605
Number of Sequences: 5004
Number of extensions: 77532
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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