Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1262
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070...    57   1e-08
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    44   1e-04
08_02_1132 - 24530921-24532906                                         30   1.9  
04_04_0219 - 23703579-23703747,23703836-23703944,23704170-237042...    30   2.5  
05_01_0486 - 4047055-4049013                                           29   5.9  
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    28   7.8  
02_05_0564 + 30003817-30005778                                         28   7.8  

>06_03_0763 -
           24405525-24405701,24406209-24406368,24406924-24407005,
           24407098-24407167,24407443-24407607,24407731-24407874,
           24408467-24408715,24409006-24409221,24409306-24409398
          Length = 451

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 24/58 (41%), Positives = 39/58 (67%)
 Frame = +3

Query: 330 ETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSK 503
           E  V++ +S+RG +++++Q     VN N+MEL +M  AC+ +SA SI  VIPY  Y++
Sbjct: 125 EIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMIDACRRASARSITVVIPYFGYAR 182



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +2

Query: 509 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYI 676
           K + R  I +KL A ++ ++G   +I  D+H  +  G+FD PVD++   P +L Y+
Sbjct: 186 KAQGREAITAKLSANLLTEAGSDRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYL 241


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +2

Query: 509 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNL 646
           K + R  I +KL+A M+ ++G + ++  DLH  +  G+FD PVD++
Sbjct: 150 KSQGRESIAAKLVANMITEAGANRVLVCDLHSSQAMGYFDIPVDHV 195


>08_02_1132 - 24530921-24532906
          Length = 661

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 346 ISTMVSLLVLWYTEQPPLRTLGGWQSNQLIQM*VSTQNNNVRRGVP 209
           IS   +LL +W+    PL  +GG+   +  Q+    + N + R +P
Sbjct: 466 ISLFFALLAMWFCISVPLTLVGGFVGTRSAQIEFPVRTNQIPREIP 511


>04_04_0219 -
           23703579-23703747,23703836-23703944,23704170-23704272,
           23704365-23704396,23704855-23705072,23706295-23706618,
           23706982-23707069,23707179-23707263
          Length = 375

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 309 VYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMEL 425
           +Y +  RE ++ I ++     IYI + G  ++NN  M L
Sbjct: 257 IYPEGLRELLLHIKENYGNPTIYITENGVDEINNKTMRL 295


>05_01_0486 - 4047055-4049013
          Length = 652

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 346 ISTMVSLLVLWYTEQPPLRTLGGWQSNQLIQM*VSTQNNNVRRGVP 209
           IS   +LL LW+    PL  +GG    +   +    + N + R +P
Sbjct: 457 ISLFFTLLALWFCISVPLTLIGGLLGTRAASIEYPVRTNQIPREIP 502


>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 111 KNLLDIVGFRLLCYSTKPGWWVYRIDLKIAIWTGT-PRRTLLF 236
           K ++D+ G  L C S+   +W+   D  I+I  G  P   +LF
Sbjct: 85  KTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILF 127


>02_05_0564 + 30003817-30005778
          Length = 653

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 346 ISTMVSLLVLWYTEQPPLRTLGGWQSNQLIQM*VSTQNNNVRRGVP 209
           IS   +LL LW+    PL  LGG+   +   +    + N + R +P
Sbjct: 459 ISLFFTLLSLWFCISVPLTLLGGFFGTRAEPIEFPVRTNQIPREIP 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,385,726
Number of Sequences: 37544
Number of extensions: 441137
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)