Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1262
(819 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18) 116 2e-26
SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17) 82 5e-16
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68) 30 2.0
SB_51758| Best HMM Match : MNNL (HMM E-Value=1.2) 30 2.6
SB_32706| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_33717| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 28 7.9
SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) 28 7.9
SB_41762| Best HMM Match : Tom22 (HMM E-Value=5.3) 28 7.9
SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5) 28 7.9
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 28 7.9
SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045) 28 7.9
SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) 28 7.9
SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_36903| Best HMM Match : p450 (HMM E-Value=0) 28 7.9
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8) 28 7.9
SB_23778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 28 7.9
SB_1704| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)
Length = 270
Score = 116 bits (280), Expect = 2e-26
Identities = 59/104 (56%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Frame = +2
Query: 509 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIPESI 688
KM KRG I +KL+A ++ KSGL+ IITMDLH KEIQGF+D PVDNLRASPF++ YI ES+
Sbjct: 13 KMHKRGAIPAKLMASLLGKSGLTSIITMDLHSKEIQGFYDIPVDNLRASPFIVHYINESV 72
Query: 689 PDYRNSVIVARNPA-LQRKLLHMPSDETSYSCHTWRQKEAESDE 817
PD RN+VIVA+NPA QR + QKE+E D+
Sbjct: 73 PDCRNAVIVAKNPASAQRATSFAERLRLGIAVIHGEQKESEGDQ 116
>SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)
Length = 227
Score = 82.2 bits (194), Expect = 5e-16
Identities = 38/70 (54%), Positives = 52/70 (74%)
Frame = +2
Query: 509 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIPESI 688
K + R I +KL+A M+ +G HIITMDLH +IQGFFD PVDNL A P +L++I E++
Sbjct: 60 KDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENV 119
Query: 689 PDYRNSVIVA 718
D++NSVIV+
Sbjct: 120 HDWQNSVIVS 129
Score = 73.7 bits (173), Expect = 2e-13
Identities = 32/58 (55%), Positives = 46/58 (79%)
Frame = +3
Query: 339 VEIADSIRGKNIYIIQTGTKDVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSKQ*K 512
VEIA+S+RG+++YIIQ+G ++N+N+MELLIM ACK +SA + VIP PY++Q K
Sbjct: 2 VEIAESVRGEDVYIIQSGCGEINDNMMELLIMINACKIASAQRVTAVIPCFPYARQDK 59
>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
Length = 794
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 7 NEVFSLVFSDQVPNCVDV*LSSK*IIFDIHKYYH*KTFWI*LASGYYVTQQNQV 168
+ FS+ F +VP V++ L + + ++H Y +FW Y+T + +
Sbjct: 396 DNAFSVSFEQKVPAAVEIFLKAVWFVTNVHVLYAFASFWCIAMCNMYITGYSMI 449
>SB_51758| Best HMM Match : MNNL (HMM E-Value=1.2)
Length = 326
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 129 VGFRLLCYSTKPGWWVYRIDLKIAIWTG-TPRR 224
+G ++ ++T+ WWV R + K+ W G TP R
Sbjct: 239 MGMTVISHNTRNTWWVSRDNAKMTYWGGATPGR 271
>SB_32706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 417 MELLIMAYACKTSSASSIVGVIPYLPYSKQ 506
MELL+M + +SA I VIPY Y++Q
Sbjct: 1 MELLLMVSTMRRASAKRINVVIPYYGYARQ 30
>SB_33717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 337 MVSLLVLWYTEQPPLRTLG-GWQSNQLIQM*VSTQNNNVRRGVPVHIAILRSI 182
M+SL +W +P +TL GW +++ +S V GV V++A+ R I
Sbjct: 53 MISLFAIWVATRPATKTLSYGWYRAEVMGAVLSVLVIWVLTGVLVYMALQRLI 105
>SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 330 ETIVEIADSIRGKNIYIIQTGTK--DVNNNIMELLIMAYACKTSSASSIVGVI 482
E + + D I +IY+++TG++ +++N + E +I TS+A+ +
Sbjct: 241 EALFQAVDHIIDMSIYLLKTGSEPSEISNTVKEAIIETATIVTSTAAESTATV 293
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 651 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 710
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 711 VFGDRSLDEI-PNSRL 725
>SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1017
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 338 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 397
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 398 VFGDRSLDEI-PNSRL 412
>SB_41762| Best HMM Match : Tom22 (HMM E-Value=5.3)
Length = 568
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 98 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 157
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 158 VFGDRSLDEI-PNSRL 172
>SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 325
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 140 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 199
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 200 VFGDRSLDEI-PNSRL 214
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 585 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 644
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 645 VFGDRSLDEI-PNSRL 659
>SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
Length = 955
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 622 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 681
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 682 VFGDRSLDEI-PNSRL 696
>SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 398
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 78 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 137
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 138 VFGDRSLDEI-PNSRL 152
>SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 115 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 174
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 175 VFGDRSLDEI-PNSRL 189
>SB_36903| Best HMM Match : p450 (HMM E-Value=0)
Length = 644
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +2
Query: 470 CWCNSILTIQ*TMKMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLR 649
CW + +K I+ +L+Q+ C SG+ H ++ ++GF +D
Sbjct: 403 CWRECVAVEMAALKSFATAVILGVVLSQLACVSGMPHSYSLG---SSLKGFLHKVLDKFH 459
Query: 650 AS 655
AS
Sbjct: 460 AS 461
>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
Length = 420
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 178 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 237
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 238 VFGDRSLDEI-PNSRL 252
>SB_23778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 176 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 235
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 236 VFGDRSLDEI-PNSRL 250
>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
Length = 1502
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 905 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 964
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 965 VFGDRSLDEI-PNSRL 979
>SB_1704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 735 CRAGFRATITELR*SGILSGIY*SKNGDALKLSTGQSKNPCISFWCKSIVIMCE-RPDLH 559
CR+G++ T+ R + Y G+AL ++ K C ++++ + +P L
Sbjct: 78 CRSGWKVTLVGSRFTHAAESRYAPIEGEALAVADALDKARFFVLGCSNLIVAVDHKPLLK 137
Query: 558 IIWAKSLETIHPRFRI 511
+ +SL+ I P R+
Sbjct: 138 VFGDRSLDEI-PNSRL 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,574,132
Number of Sequences: 59808
Number of extensions: 548951
Number of successful extensions: 1471
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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