Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1262
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical pr... 107 7e-24
U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical pr... 85 4e-17
U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical pr... 85 4e-17
U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical pr... 85 4e-17
U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical pr... 85 4e-17
Z50794-8|CAA90655.2| 450|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z49937-9|CAO78727.1| 450|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF039053-14|AAW88407.1| 314|Caenorhabditis elegans Hypothetical... 30 2.3
Z78539-1|CAB01727.1| 350|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z69634-9|CAO82013.1| 575|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z69634-8|CAA93452.4| 591|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF039053-10|AAC25884.2| 361|Caenorhabditis elegans Seven tm rec... 29 5.3
Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical pr... 28 9.2
>Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical
protein W04G3.5 protein.
Length = 353
Score = 107 bits (258), Expect = 7e-24
Identities = 44/78 (56%), Positives = 64/78 (82%)
Frame = +2
Query: 509 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIPESI 688
+M +R I KL+A+M+CK+G S ++++DL++KEIQGFF CPVDNLRASPF LQ+I +I
Sbjct: 106 RMLRRSSIAMKLVAEMICKAGASRLVSLDLYKKEIQGFFSCPVDNLRASPFFLQHIKTNI 165
Query: 689 PDYRNSVIVARNPALQRK 742
PDY+N++IVA++P + K
Sbjct: 166 PDYKNAIIVAKSPGVMNK 183
Score = 102 bits (244), Expect = 4e-22
Identities = 42/73 (57%), Positives = 62/73 (84%)
Frame = +3
Query: 288 VRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLIMAYACKTSSASS 467
+R G +VY+KTNRET V+I S+RGK+++I+Q+G+K+VNN++MELL++ YACKTS + +
Sbjct: 32 IRLGEATVYNKTNRETSVDIKQSVRGKHVFILQSGSKNVNNDVMELLVLIYACKTSMSKT 91
Query: 468 IVGVIPYLPYSKQ 506
I ++PYLPYSKQ
Sbjct: 92 ITVIMPYLPYSKQ 104
>U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical
protein R151.2c protein.
Length = 318
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = +2
Query: 509 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIPESI 688
K + R I +KL+A M+ +G HIITMDLH +IQGFFD PVDNL A P +L+YI ESI
Sbjct: 99 KDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESI 158
Query: 689 PDYRNSVIVA 718
P+++ SVIV+
Sbjct: 159 PNWQTSVIVS 168
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Frame = +3
Query: 273 CQPPRVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLIMAYACKT 452
C+ ++ S+ +N+ET VEI +S+RG+++YIIQ+ ++N+N+MELLIM ACK
Sbjct: 19 CERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEINDNLMELLIMINACKI 78
Query: 453 SSASSIVGVIPYLPYSKQ*K 512
+S+ + VIP PY++Q K
Sbjct: 79 ASSCRVAAVIPAFPYARQDK 98
>U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical
protein R151.2b protein.
Length = 319
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = +2
Query: 509 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIPESI 688
K + R I +KL+A M+ +G HIITMDLH +IQGFFD PVDNL A P +L+YI ESI
Sbjct: 100 KDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESI 159
Query: 689 PDYRNSVIVA 718
P+++ SVIV+
Sbjct: 160 PNWQTSVIVS 169
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Frame = +3
Query: 273 CQPPRVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLIMAYACKT 452
C+ ++ S+ +N+ET VEI +S+RG+++YIIQ+ ++N+N+MELLIM ACK
Sbjct: 20 CERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEINDNLMELLIMINACKI 79
Query: 453 SSASSIVGVIPYLPYSKQ*K 512
+S+ + VIP PY++Q K
Sbjct: 80 ASSCRVAAVIPAFPYARQDK 99
>U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical
protein R151.2a protein.
Length = 377
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = +2
Query: 509 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIPESI 688
K + R I +KL+A M+ +G HIITMDLH +IQGFFD PVDNL A P +L+YI ESI
Sbjct: 158 KDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESI 217
Query: 689 PDYRNSVIVA 718
P+++ SVIV+
Sbjct: 218 PNWQTSVIVS 227
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Frame = +3
Query: 273 CQPPRVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLIMAYACKT 452
C+ ++ S+ +N+ET VEI +S+RG+++YIIQ+ ++N+N+MELLIM ACK
Sbjct: 78 CERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEINDNLMELLIMINACKI 137
Query: 453 SSASSIVGVIPYLPYSKQ*K 512
+S+ + VIP PY++Q K
Sbjct: 138 ASSCRVAAVIPAFPYARQDK 157
>U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical
protein R151.2d protein.
Length = 446
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = +2
Query: 509 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIPESI 688
K + R I +KL+A M+ +G HIITMDLH +IQGFFD PVDNL A P +L+YI ESI
Sbjct: 227 KDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESI 286
Query: 689 PDYRNSVIVA 718
P+++ SVIV+
Sbjct: 287 PNWQTSVIVS 296
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Frame = +3
Query: 273 CQPPRVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLIMAYACKT 452
C+ ++ S+ +N+ET VEI +S+RG+++YIIQ+ ++N+N+MELLIM ACK
Sbjct: 147 CERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEINDNLMELLIMINACKI 206
Query: 453 SSASSIVGVIPYLPYSKQ*K 512
+S+ + VIP PY++Q K
Sbjct: 207 ASSCRVAAVIPAFPYARQDK 226
>Z50794-8|CAA90655.2| 450|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 450
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 354 SIRGKNIYIIQTGTKDVNNNIMELLIMAYACKTSSASSIVGVIP 485
+I G I +TG + V N +E +I Y C A + V V+P
Sbjct: 40 AICGFYILFAETGVRQVMNGFVEPVIKTYNCTKDQADTAVLVVP 83
>Z49937-9|CAO78727.1| 450|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 450
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 354 SIRGKNIYIIQTGTKDVNNNIMELLIMAYACKTSSASSIVGVIP 485
+I G I +TG + V N +E +I Y C A + V V+P
Sbjct: 40 AICGFYILFAETGVRQVMNGFVEPVIKTYNCTKDQADTAVLVVP 83
>AF039053-14|AAW88407.1| 314|Caenorhabditis elegans Hypothetical
protein C45H4.18 protein.
Length = 314
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Frame = -1
Query: 612 ISFWCKSIVIMCERPDL--HIIWAKSLETIHPRFRIFIVYCMVSMELHQQLNWQRKSYKR 439
I+ WC + E+P L I+ + I+ ++ I++C + + L +N+Q+K+ +
Sbjct: 96 ITAWCAA-----EKPQLVLKIVIYANYMIIYSKYVAMILFCGLRVALMHSINFQQKTIRW 150
Query: 438 RPL*AIPLCCCSH-L*FQSV*YKYSCHELNQQFPQWSLC*SCGILNNLLYAP 286
P+ + L C+ L + +C +L + FP S+ I Y P
Sbjct: 151 FPMLTMVLIPCAFCLALPRLLAPTTCAQLGRPFPFGSVIIMTFIEREARYRP 202
>Z78539-1|CAB01727.1| 350|Caenorhabditis elegans Hypothetical
protein C31E10.1 protein.
Length = 350
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 150 NIIT*SQLYPEGFLMIIFVNVENNLFRRQLNVYAV 46
+IIT +Y G ++F N +N++F R+++ Y V
Sbjct: 61 DIITNPTVYSYGPAFVVFRNYDNSMFTREMSFYMV 95
>Z69634-9|CAO82013.1| 575|Caenorhabditis elegans Hypothetical
protein B0001.3b protein.
Length = 575
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 113 KPSGYSWLQVIMLLNKTRLVGLSNRSQNCNMDGNST 220
K S YSW + +L + + GLS S+N MD NST
Sbjct: 465 KLSSYSW-PMPPILQRPAVSGLSTPSRNGRMDANST 499
>Z69634-8|CAA93452.4| 591|Caenorhabditis elegans Hypothetical
protein B0001.3a protein.
Length = 591
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 113 KPSGYSWLQVIMLLNKTRLVGLSNRSQNCNMDGNST 220
K S YSW + +L + + GLS S+N MD NST
Sbjct: 481 KLSSYSW-PMPPILQRPAVSGLSTPSRNGRMDANST 515
>AF039053-10|AAC25884.2| 361|Caenorhabditis elegans Seven tm
receptor protein 255 protein.
Length = 361
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Frame = -3
Query: 412 LLFTSLVPVCM---------I*IFLPRIESAISTMVSLLVLWYTEQPPLRTL 284
L+F SL+PV + + IFL + AI VSL V WY PL L
Sbjct: 255 LVFQSLIPVLLLHIPASIIFVTIFLGKSTEAIGETVSLTVAWYPALNPLPAL 306
>Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical
protein B0331.2 protein.
Length = 523
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 301 VVQYTTRLTERPLWKLLIQFVARIFISY 384
++QY TE W +++ F+ F+SY
Sbjct: 5 LLQYAPNWTEHATWLVIVAFIFAFFVSY 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,353,184
Number of Sequences: 27780
Number of extensions: 425419
Number of successful extensions: 978
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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