Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1262
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.8  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 626 DCPVDNLRASPFLLQYIPESIPDYRNSVIVAR 721
           D  +DNLR + +L   I ES+     +  +AR
Sbjct: 369 DLTIDNLRKAKYLRACITESLRLIPTTTCIAR 400


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 378 IIQTGTKDVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSKQ 506
           +I  GTK +  N+      AY C+ SS   I   I  L   +Q
Sbjct: 452 LIGNGTKLIIKNVDYADTGAYMCQASSIGGITRDISSLVVQEQ 494


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 302 TSFTHPRRLAIKSANSDVSFHSK 234
           T  T  RRL+ K + S + FH+K
Sbjct: 243 TEDTQERRLSNKGSISKLQFHNK 265


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
 Frame = +3

Query: 81  YFRHSQILS------LKNLLDIVGFRLLCYSTKPGWWVYRIDLKIA--IWTGTPRRTLLF 236
           Y+ H QI++      L N L  V   +  +   P  +  ++D  +A   W   P  T+L 
Sbjct: 235 YYMHQQIMARYNCERLCNRLGRVKRFINWHEPIPEAYFPKLDSLVASRTWPFRPSGTVLK 294

Query: 237 *VETHI*IS*FDCQPPRVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNI 416
            +   +    FD Q   + +    +Y   +  +++    + RG+ I + +    DV  NI
Sbjct: 295 DINRQVDELNFDIQD--LERWRDRIYEAIHTGSVI----NTRGERIQLTEKNGIDVLGNI 348

Query: 417 MELLIMA 437
           ME  I++
Sbjct: 349 MEASILS 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,519
Number of Sequences: 438
Number of extensions: 5514
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)