Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1261
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.2  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 324 YRHLLF*PFFTRLSPDLVNLERHPGQESLDSKKKLASLINSRIYVALYREIVFIIC 491
           +RH +   FF      LVNL+       L   K   +L+ + +Y +L    +F++C
Sbjct: 372 FRHSVRSVFFLSEIFGLVNLKYRETYFRLSKTKTFCTLVTALVYCSL---AIFVLC 424


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 590 ALPMDNDNAQSYLSQCIVKHCPQI*LEDQTGSNTYYK 480
           +LP     ++   +Q   K  P+   EDQT  N YY+
Sbjct: 198 SLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYR 234


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 85  EEAHQNRVEDKVK*QDLCCR*KQLLYN 5
           EE  + R EDK K + LC   K +L N
Sbjct: 544 EEEKKKREEDKAKFEGLCKVMKSILDN 570


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,162
Number of Sequences: 336
Number of extensions: 4107
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)