Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1261
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 1.3
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.4
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 27 2.4
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 27 4.1
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 5.4
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 7.2
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 7.2
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer... 26 7.2
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 7.2
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 9.5
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 25 9.5
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 188 SFHYYLDYCRLLNYQAATSAPWCPGSG 108
+F YLD L+NY T+ P GSG
Sbjct: 1446 AFDIYLDQDMLMNYSLGTAVPTLAGSG 1472
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 451 ILEFIRLASFFLESRDSCPGC 389
++EF+R+ S RDSCP C
Sbjct: 62 VMEFVRIISTKRPLRDSCPDC 82
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 2.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 95 LAVFYQTLDTKVPKW 139
+ V+Y+ LDTK+P+W
Sbjct: 834 IIVYYEKLDTKIPQW 848
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 637 ISFIGRQVYISLKQRQHCPWTTTTPKATYLNAL*NIVLKFDLKT 506
I F G+ + + LK C W TTP L + N + L+T
Sbjct: 358 IFFKGKNILLYLKLTGDCLWPRTTPFGKTLGPIANAINACALRT 401
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 631 FIGRQVYISLKQRQHCPWTTTTPKATYLNA-L*NIVLKFDLKTKLVPIHIINTISLYNA 458
F+ +Y+S + +H P T +A L++ L I F L+ L +H+ +SL A
Sbjct: 508 FVPANIYVSKDRLKHLPTTELAAQAAVLDSKLEGISTMFSLELALKIVHLCK-VSLARA 565
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 74 VGFFAALLAVFYQTLDTKVPKWQLDSSIIG 163
VGFF ++L ++ D V ++ +IIG
Sbjct: 293 VGFFVSVLDALFECFDVPVVQYMYQENIIG 322
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 789 FHVGSIWHWLKPQ 751
+H+GS+W WL+ Q
Sbjct: 399 YHLGSVWPWLQQQ 411
>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 250
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 98 AVFYQTLDTKVPKWQLDSSIIG 163
A+F+ LD KV +W+ SS++G
Sbjct: 88 ALFFDFLDGKVARWRGKSSLMG 109
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 676 YYFNKVLSYLYVHLRHFTHSFFLLGLGLQPMPDTANV 786
Y+FN + +Y + LR + LL + +P+P + N+
Sbjct: 233 YFFNSLFAYFIILLR-IINEVILLAINYRPIPLSYNM 268
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -1
Query: 605 IETKTALPMDNDNAQSYLSQCIVKHC 528
++TKT P+D+ + ++ + I++HC
Sbjct: 1033 VDTKTGEPVDDKDVKAKYEKYILEHC 1058
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 390 HPGQESLDSKKKLASLINSRIYVALYREIVFIICIGTSLVFKSNLRTMF 536
HP S + K +S SR ++L+ +VF++ + T+ V++ + TM+
Sbjct: 146 HPSTGSFEVK---SSSSKSRSSMSLFH-VVFVLNVPTATVYRPTVNTMY 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,832
Number of Sequences: 5004
Number of extensions: 68232
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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