Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1261
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943...    28   7.5  
04_04_0463 - 25397837-25399693,25402136-25402405                       28   9.9  
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176...    28   9.9  

>02_05_0661 -
           30693701-30693853,30694037-30694196,30694290-30694381,
           30694469-30694543,30694671-30694799,30694916-30695003,
           30695118-30695224,30695645-30695693,30695802-30695905,
           30696108-30696147,30696838-30696911
          Length = 356

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 122 TKVPKWQLDSSIIGSNPGNNGTIFL 196
           +K+PKW  D S  G  PG +  + L
Sbjct: 48  SKLPKWNYDGSSTGQAPGEDSEVIL 72


>04_04_0463 - 25397837-25399693,25402136-25402405
          Length = 708

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
 Frame = +2

Query: 77  GFFAALLAVFYQTLDTKVPKWQLDSSIIGSNP------GNNGTIFL*LIMADAQVDVLIS 238
           G  + ++     +++   P  QL S   GS P      G NG++ +  + AD + D+L+S
Sbjct: 460 GLLSIVIQEMRVSMECVHPGVQLSSIKSGSYPSKVARDGRNGSVDIGHLYADEERDILLS 519

Query: 239 FTMSIKQSRRKNENLK 286
             ++I QSR +   LK
Sbjct: 520 --VNIPQSRHQTSALK 533


>02_01_0267 -
           1766071-1766261,1766368-1766569,1766719-1766814,
           1767414-1767560,1767635-1767800,1767907-1767973,
           1772850-1772949,1773029-1773099,1773199-1773382,
           1773784-1773929,1774484-1774663,1774737-1774824,
           1775634-1775838,1775945-1776081,1776529-1776612,
           1776718-1776894,1777050-1777194,1777642-1777763,
           1777846-1778091,1778571-1778789,1779016-1779094,
           1779178-1779257,1779291-1779320
          Length = 1053

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 206 MADAQVDVLISFTMSIKQSRRKNENLK 286
           M  A VD + +FT+ I++ +R+ +NLK
Sbjct: 705 MLKANVDAINNFTIKIEELKRQRDNLK 731


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,034,018
Number of Sequences: 37544
Number of extensions: 389310
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)