Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1261
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)                   29   5.8  
SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)                  28   7.6  

>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 667 CLNYYFNKVLSYLYVH-LRHFTHSFFLLGLGLQ 762
           C   Y+NK +S++Y+H      HS  ++G G++
Sbjct: 376 CKGGYYNKAMSWIYLHDSSSSVHSVLVVGYGVE 408


>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 229

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 25  IYSKDPAILPYLLRDFGGLLRCS--ASGI 105
           I SKDP +   L+  FGG++ CS  ASGI
Sbjct: 146 IVSKDPRVKVILVNIFGGIVDCSVVASGI 174


>SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
          Length = 391

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 640 TNKLWPGYEC-LNYYFNKVLSYLYVHLRHFTHSFFLLGLGLQPMPDTAN 783
           ++K+ P ++C LN+ +N +  YL+V +   T    +L +  +    T N
Sbjct: 181 SSKIRPSWDCKLNHIYNHIFVYLFVSIEVLTPVLLMLAVHCRITKATMN 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,579,226
Number of Sequences: 59808
Number of extensions: 466894
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)