Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1261
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81550-4|CAB04477.1|  317|Caenorhabditis elegans Hypothetical pr...    38   0.011
Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical pr...    35   0.059
Z70307-1|CAA94334.1|  205|Caenorhabditis elegans Hypothetical pr...    32   0.55 
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p...    29   5.1  
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p...    29   5.1  
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ...    29   5.1  
Z81146-5|CAB03522.3|  699|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z81550-4|CAB04477.1|  317|Caenorhabditis elegans Hypothetical
           protein F55F3.3 protein.
          Length = 317

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +2

Query: 80  FFAALLAVFYQTLDTKVPKWQLDSSIIGSNPG 175
           FF   L++F +TLD KVP++    +IIG NPG
Sbjct: 63  FFIGCLSIFLRTLDPKVPRFYGKGTIIGVNPG 94


>Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical
           protein C17E4.9 protein.
          Length = 320

 Score = 35.1 bits (77), Expect = 0.059
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 80  FFAALLAVFYQTLDTKVPKWQLDSSIIGSNPG 175
           F+   L +F +TLD KVP++    +IIG NPG
Sbjct: 66  FWLTCLTIFMKTLDPKVPRFYGKGTIIGVNPG 97


>Z70307-1|CAA94334.1|  205|Caenorhabditis elegans Hypothetical
           protein C39E9.1 protein.
          Length = 205

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -1

Query: 653 HNLFVNFLYR*TSIHLIETKTALPMDNDNAQSYLSQCIVKHCPQI*LEDQTGSNTYYKY 477
           HN F + L   T +    TK A  +++      LS  + KH P+  LE + G N YY+Y
Sbjct: 33  HNTFRSKLALGTYVSKGVTKPAAKIEHHT--DCLSSSLRKHMPKKSLESRVGENIYYRY 89


>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 505 KLVPIHIINTISL-YNATYILEFIRLASFFLES-RDSCP 395
           KL   H +N + L   A Y+L F RLA+ F  +  D CP
Sbjct: 544 KLAEKHWLNCLQLPAQARYVLSFARLAAHFTSALHDMCP 582


>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 505 KLVPIHIINTISL-YNATYILEFIRLASFFLES-RDSCP 395
           KL   H +N + L   A Y+L F RLA+ F  +  D CP
Sbjct: 544 KLAEKHWLNCLQLPAQARYVLSFARLAAHFTSALHDMCP 582


>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
           protein.
          Length = 1141

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 505 KLVPIHIINTISL-YNATYILEFIRLASFFLES-RDSCP 395
           KL   H +N + L   A Y+L F RLA+ F  +  D CP
Sbjct: 544 KLAEKHWLNCLQLPAQARYVLSFARLAAHFTSALHDMCP 582


>Z81146-5|CAB03522.3|  699|Caenorhabditis elegans Hypothetical
           protein K10D11.3 protein.
          Length = 699

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = -2

Query: 682 NNNSNIRTLATIYLSISFIGRQVYISLKQRQHCPWTTTTPKATYLN 545
           NNNS+       Y    +         K  Q C WT   P  T++N
Sbjct: 37  NNNSSTDQYNPYYYPYPWWPNSYIPRYKSNQFCKWTVVIPDRTFIN 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,901,466
Number of Sequences: 27780
Number of extensions: 369908
Number of successful extensions: 788
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)