Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1261
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12740.1 68417.m02001 adenine-DNA glycosylase-related / MYH-r...    30   1.5  
At1g66200.1 68414.m07514 glutamine synthetase, putative similar ...    28   6.2  

>At4g12740.1 68417.m02001 adenine-DNA glycosylase-related /
           MYH-related similar to MYH (GI:18845094) [Rattus
           norvegicus]; similar to adenine-DNA glycosylase
           (GI:12656850) [Mus musculus]; contains TIGRFAM profile
           TIGR01084: A/G-specific adenine glycosylase (hits below
           the trusted cutoff)
          Length = 630

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 591 STAHGQRQRPKLLISMHCKTLS 526
           ST   QRQ PK ++S HCK  S
Sbjct: 16  STVASQRQNPKTILSFHCKVSS 37


>At1g66200.1 68414.m07514 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (Glutamate--
           ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
          Length = 356

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 122 TKVPKWQLDSSIIGSNPGNNGTIFL 196
           +K+PKW  D S  G  PG +  + L
Sbjct: 48  SKLPKWNYDGSSTGQAPGQDSEVIL 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,549
Number of Sequences: 28952
Number of extensions: 336060
Number of successful extensions: 633
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)