Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1260
         (769 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54LG0 Cluster: Putative uncharacterized protein; n=1; ...    35   2.6  
UniRef50_UPI00006CD8E9 Cluster: hypothetical protein TTHERM_0052...    33   5.9  
UniRef50_Q05FL4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  

>UniRef50_Q54LG0 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1390

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 149 VFNNRTKLYTELYTQIIYRNYNNMISINYSRILTTGDH*LL*NHEITKPLLRCN 310
           +FN      T+  T I   + NN  + NY +++   D  +  NH  TKP L CN
Sbjct: 465 IFNIGNNNTTDTSTMIFNNDNNNNNNNNYQKLIKVYDQEVYENHFFTKPKLYCN 518


>UniRef50_UPI00006CD8E9 Cluster: hypothetical protein TTHERM_00522830;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00522830 - Tetrahymena thermophila SB210
          Length = 2721

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
 Frame = +2

Query: 2    EYKK--SNKKSVKLFFCV*SVVKLRID*ILFVLNNI----FLKCSLGEFF*RSKIVFNNR 163
            ++KK  S  K+V  + C  S++ ++ + +L   N +    FLK    +F   ++I    +
Sbjct: 1263 QWKKLHSYNKNVT-YLCAKSIIAIKNEILLKYFNKLKQKWFLKSQENKFIKENQIKMKRK 1321

Query: 164  TKLYTELYTQIIYRNYNNMISINYSR 241
              L    YT     NY NMI+IN  R
Sbjct: 1322 ILLGLRKYTTYKINNYENMIAINEKR 1347


>UniRef50_Q05FL4 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 128

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 148 YFTSLKEFAKTTL*KN---IIKDK*YLIYSQFDHRLYAKKKFDTFL 20
           YF  LK F K    KN   I K K YLI+S F  +LY     + FL
Sbjct: 81  YFNKLKFFKKFKFYKNFTFIFKKKKYLIFSSFKKKLYLSSILNNFL 126


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,858,344
Number of Sequences: 1657284
Number of extensions: 11469804
Number of successful extensions: 22623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22617
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)