Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1260
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   5.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   6.8  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   6.8  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    26   6.8  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.8  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 616 HDNRVLEEGILPSGRTLST 672
           HD RVL   + P GR LST
Sbjct: 435 HDTRVLYSALSPDGRILST 453


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 161 RTKLYTELYTQIIYRNYNNMISINYSRIL 247
           RT+++  L TQ +YR  N     NYSR +
Sbjct: 819 RTRIWASLRTQTLYRTINGF--SNYSRAI 845


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 608 VTSSALTQNIRVRRYRPPYNMRVYRL 531
           +TS   T +IR   ++PP+N++V +L
Sbjct: 318 LTSIPSTPSIRSHVFKPPFNLKVLQL 343


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 285 LRNRFYGVISYFILFLFTLVL 347
           L N  + VI +F+ +LFTL+L
Sbjct: 276 LNNVLFWVIQFFVPYLFTLIL 296


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 161 RTKLYTELYTQIIYRNYNNMISINYSRIL 247
           RT+++  L +Q +YR  + M  +NYSR L
Sbjct: 915 RTRIWASLRSQTLYRTASGM--MNYSRAL 941


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 359 DLRNPKVKNKLIYCNFQFLTKPKGK*WLS*EFSNKVF*TQLI 484
           +L +P+   +LIY  F+F T   G+ +L  E  + ++   LI
Sbjct: 700 ELISPEELQRLIYYYFEFFTTTGGEYYLKKEVQHSLYILSLI 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,868
Number of Sequences: 5004
Number of extensions: 52027
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)