Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1260
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0033 - 19437746-19437916,19438063-19438145,19438266-194383...    28   9.4  
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299...    28   9.4  

>11_06_0033 -
           19437746-19437916,19438063-19438145,19438266-19438359,
           19438478-19438551,19438825-19438861,19440767-19440844,
           19440927-19441022,19441719-19441815,19441910-19442015,
           19442136-19442208,19442537-19442680,19443241-19443681
          Length = 497

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 725 AFRMNFKIKDVTRTWSSRVLSVRPEGRIPSSNTRLSWQ 612
           AFR+   +KDV   +    + +R  GRI  + T+LSW+
Sbjct: 191 AFRLGAVLKDVLDRFLPDDVHIRCNGRIRVAITQLSWR 228


>06_03_1479 +
           30428488-30428502,30428619-30428715,30429627-30429904,
           30430256-30431032,30431254-30431343,30431538-30431605,
           30431696-30431789,30431902-30431961
          Length = 492

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 719 RMNFKIKDVTRTWSSRVLSVRPEGRI 642
           R +F   DVT+TW   ++ ++P GR+
Sbjct: 281 RFDFDPLDVTKTWPEDIIPLQPVGRM 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,832
Number of Sequences: 37544
Number of extensions: 270123
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)