Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1258
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   2.8  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   3.7  
SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.5  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   8.6  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   8.6  

>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 29  VTQRICKLFTYIRCLKCKFCSVLYNLLAVTSGW 127
           V+ RI ++F  +  +KC  CSV+++  +  S +
Sbjct: 240 VSNRIVRIFFLLSAMKCLGCSVIWHTFSSLSNY 272


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 436 VFSELKTMSPTHYCKRDDLTKQDVKISLMLQFQLK 540
           V  ++KT +P HYC R +  K + K ++ +Q  L+
Sbjct: 33  VIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQ 67


>SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 742 QILDLIDPFFSSCTHLEVMNG-CIKWRSKILA*CISVKVNGFLHAYASASSLVIFIK 575
           +++D ++     C  + + NG C  WR +IL    +V + G +  Y      +  +K
Sbjct: 22  ELVDSVNCVADLCHAIWMFNGGCADWRLQILKEGFTVPMTGIISQYLKTDDHIKIVK 78


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 632 SKWFFACICICQFTSYFYK 576
           +KWFF C+C      +F K
Sbjct: 14  TKWFFCCVCTILTMPFFKK 32


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 633 LTEMHYARILLRHLIHPFITSKWVQLEKKGS 725
           L + + A I+ RHLI P+IT   +++ K  S
Sbjct: 127 LPKFNGATIIYRHLIRPYITPHVIRICKSVS 157


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 347 GISSFNFSFHNCWSVFTNSLKCLQVELKLSILGNHYFS 234
           GIS   F    C+  F NSL+  ++E KL     HY S
Sbjct: 646 GISP-EFMLERCFFQFQNSLEVPKLEAKLEESQQHYDS 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,234
Number of Sequences: 5004
Number of extensions: 60108
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)