Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1258
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    29   2.9  
06_03_0636 + 22983898-22985043                                         29   2.9  
08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698,220...    28   6.8  
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742...    28   6.8  

>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 256 ILNFSSTCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNY 435
           +LNF  +C    ELV     LW+E       D  +   E D H  DW   +K    +K++
Sbjct: 557 LLNFFRSCTELKELV-----LWRE-------DKVYFEEECDVHSDDWSSALKDIACLKSH 604

Query: 436 V 438
           +
Sbjct: 605 L 605


>06_03_0636 + 22983898-22985043
          Length = 381

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 340 LIPDAAFVVVESDCHDGD 393
           +IPD   VV+ SDCH GD
Sbjct: 327 VIPDGRVVVIGSDCHGGD 344


>08_01_0272 +
           2200061-2200078,2200835-2202076,2202201-2202698,
           2203316-2203345
          Length = 595

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 540 MSLAYAINILQDFIKITSELADAYACKKPFTLTEMHYARILLRHLIHPFITSKWVQ 707
           +S A+ + IL  FI ++S  A   A    F  T  H     +  L+HP    +W Q
Sbjct: 308 LSGAFILEILSVFIVVSSFWAYFMATVSDFLCTRCHDVIFSIVKLVHPESKPQWSQ 363


>01_06_1788 -
           39873900-39873986,39874009-39874137,39874180-39874246,
           39874874-39874909,39875146-39875292,39875772-39875899,
           39876349-39876435,39876523-39876633,39877433-39877600,
           39877665-39877749,39877826-39877942,39878051-39878127,
           39879981-39880077,39880175-39880377,39880519-39880645,
           39880687-39880754,39880855-39880908,39880990-39881108,
           39881651-39881729,39881803-39881865,39882113-39882232,
           39882718-39882774,39882872-39882988,39883122-39883172,
           39883262-39883360,39883438-39883583,39883740-39883887
          Length = 928

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 453 NNVTNTLLQTG*FNKAGCQDFFNVAISTKMSLAYAINILQDFIKITSELADAYAC 617
           NN+   L+Q G FNKA    ++  AI    +   A   L +  K+T    DA  C
Sbjct: 226 NNIAGLLMQWGDFNKAAL--YYKEAIKCNPAFYDAHLNLGNLYKVTGMRQDAIVC 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,362,657
Number of Sequences: 37544
Number of extensions: 314174
Number of successful extensions: 610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)