Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1258
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_35209| Best HMM Match : Ank (HMM E-Value=0)                         29   5.2  
SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)                 28   6.9  

>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 256 ILNFSSTCKHFNELVNTDQQLWKEKLKE 339
           +LN S TC+ F EL      LWK+  K+
Sbjct: 36  LLNLSETCRRFKELCFECDTLWKDLCKQ 63


>SB_35209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 787

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 50  LFTYIRCLKCKFCSVLYNLLAVTSGWSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISI 229
           L  Y+R  +  FC ++YN    T+  SS  I      ++ +HI+   L+ + L  EV+ I
Sbjct: 728 LTVYLRSNEQDFCGIVYN---TTNLCSSSLIVRQDGFVKLLHIVCIVLACFHLSKEVLQI 784

Query: 230 I 232
           +
Sbjct: 785 V 785


>SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)
          Length = 335

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 504 CQDFFNVAISTKMSLAYAINILQDFIKITSELADAY-ACKKPFTLTEM 644
           CQ       +  +++AYA+ ++     ITS   D Y A  KPF  T++
Sbjct: 59  CQYLIGFQNAAVINVAYAVVLISGAANITSVTLDRYLAITKPFKYTDL 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,249,249
Number of Sequences: 59808
Number of extensions: 398758
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)