Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1258
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z50006-1|CAA90301.1|  190|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical
           protein F22E10.1 protein.
          Length = 1318

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +3

Query: 447 IENNVTNTLLQTG*FNKAGCQDFFNVAISTKMSLAYAINILQDFIKITSELADAYACKKP 626
           I  N+TN+LL     + A   DF++ A+ T + L   I I+   +     +   Y C + 
Sbjct: 113 IAGNITNSLL----IHNATSDDFYDSAM-TNVWLFGGIGIIVLIVNFVQYMCFQYCCIRI 167

Query: 627 FTLTEMHYARILLR 668
            +  + HY + +LR
Sbjct: 168 TSKMKQHYIQSILR 181


>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 647 MHFSQSKWFFACICICQFTSYFY---KILKNVDSIGQTH 540
           MH+SQ +W F C+      S+     KIL    SI ++H
Sbjct: 1   MHYSQMRWMFFCLTALLHGSFIVNAAKILVYCPSISKSH 39


>Z50006-1|CAA90301.1|  190|Caenorhabditis elegans Hypothetical
           protein T07C5.1b protein.
          Length = 190

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 647 MHFSQSKWFFACICICQFTSYFY---KILKNVDSIGQTH 540
           MH+SQ +W F C+      S+     KIL    SI ++H
Sbjct: 1   MHYSQMRWMFFCLTALLHGSFIVNAAKILVYCPSISKSH 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,028
Number of Sequences: 27780
Number of extensions: 337868
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)