Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1256
         (764 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9ZZN2 Cluster: Succinate dehydrogenase hydrophobic sub...    34   4.4  
UniRef50_A5K3J2 Cluster: Putative uncharacterized protein; n=1; ...    34   4.4  

>UniRef50_Q9ZZN2 Cluster: Succinate dehydrogenase hydrophobic
           subunit; n=1; Cyanidioschyzon merolae|Rep: Succinate
           dehydrogenase hydrophobic subunit - Cyanidioschyzon
           merolae (Red alga)
          Length = 79

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -3

Query: 525 FDISLTRNIFIVLSSFVFYY-YLINTYICLNTLLTTSIKNSNILL 394
           F+I LT N+ + +  F+F+  +L+ + ICL TL+   +  +NIL+
Sbjct: 4   FNIFLTINLLLFIVIFIFHENFLLYSLICLITLIHIQLSKNNILI 48


>UniRef50_A5K3J2 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 927

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
 Frame = +2

Query: 320 FNKKNLSI-NYYRSNVIKNNTLNCFINRMFEFFIDVVNN------VFRQIYVLIK 463
           FNK  L + NY + N  K N++N   N +FEFF  + NN       + Q++ LIK
Sbjct: 19  FNKSYLDLSNYSKDNYGKQNSINN-TNEVFEFFTSITNNQKDISKKYEQLFSLIK 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,371,994
Number of Sequences: 1657284
Number of extensions: 10125820
Number of successful extensions: 23156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23149
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)