Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1256
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    29   0.55 
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    28   1.7  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   3.9  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    26   6.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.0  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 445 LSKHIIDNIDKKLEHSINETVQCIV 371
           +S  +ID I +KLE+SI  T+ C++
Sbjct: 172 ISNDMIDEIPEKLENSIQTTIDCVL 196


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 321 NSHYFTSLRLGFIIQDLNIFEGSTI 247
           N  Y  S R+GFI +D  +F+GS+I
Sbjct: 209 NVAYDWSQRIGFIQEDYTVFDGSSI 233


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 74  SQNLYLCTLSKKTYDLNYLRPC 9
           SQNLYL T+++K  D ++ + C
Sbjct: 56  SQNLYLDTINRKLLDFDFEKVC 77


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 53  YINTSFENSLIMMFDLRKTNCIVIKYVFKPNYEVFSKTLVLVTSI 187
           +++ S +N+ I ++DLR  NC  +  V  P    F  T ++  S+
Sbjct: 127 FLSASLDNT-IRLWDLRSPNCQGLLNVSSPVVAAFDATGLIFASV 170


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 112  VCFSKIKHHNE*ILKTCIYVH 50
            VC  K K  N  +LK+CIYVH
Sbjct: 1628 VCIWKQKSEN--LLKSCIYVH 1646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,425
Number of Sequences: 5004
Number of extensions: 50602
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)