Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1256
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178...    29   4.1  
11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128...    28   7.1  

>03_05_0226 -
           22115285-22115404,22115477-22116661,22117037-22117861,
           22118029-22118106,22118370-22118420,22118510-22118581,
           22118666-22118667,22119453-22119557,22119668-22119749,
           22120178-22120227,22120514-22120567,22121084-22121164,
           22121567-22121656,22121884-22121964,22122304-22122544
          Length = 1038

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 721 QTFHSSSRLSQIFNSQPGIMQTATVFSNYKNFVV*GKYFTFNTQ-IEPHLLKTAGLD 554
           Q F  +S + QI +SQP I +     S   NFV   + F    + +E + L+   LD
Sbjct: 264 QNFSYTSLMEQIISSQPSISEVQQEISTESNFVATPRAFQVEDEDLEDNELENWNLD 320


>11_06_0062 +
           19709801-19710832,19712383-19712568,19712661-19712867,
           19712940-19713078,19713172-19713380,19713520-19714134
          Length = 795

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 320 FNKKNLSINYYRSNVIKNNTLNCFINRMFEFFID 421
           F K N ++NY   N     +L C +N+  +F +D
Sbjct: 665 FEKHNTTLNYLVENGFNVQSLQCKLNKALQFKLD 698


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,285,490
Number of Sequences: 37544
Number of extensions: 221600
Number of successful extensions: 350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)