Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1256
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12096| Best HMM Match : ig (HMM E-Value=9.4e-33)                    30   2.3  
SB_22673| Best HMM Match : FixQ (HMM E-Value=7.6)                      28   7.2  

>SB_12096| Best HMM Match : ig (HMM E-Value=9.4e-33)
          Length = 942

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 120 TIQFVFRRSNIIMSEFSKLVFMYIIEEDIRS 28
           TI  + + SNI M++   LVF+Y+ E D+++
Sbjct: 483 TINLLPQSSNIAMTQNGNLVFLYVTEADLKT 513


>SB_22673| Best HMM Match : FixQ (HMM E-Value=7.6)
          Length = 184

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -3

Query: 540 PVII*FDISLT-----RNIFIVLSSFVFYYYLINTY-ICLNTLLTTSIKN 409
           PV++ F +S+      R + + + S V+Y+YL   Y IC+ T +  S  N
Sbjct: 57  PVVVVFGLSMLPVTVFRLVMVYIPSLVYYHYLFVLYNICMITTVINSSAN 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,485,734
Number of Sequences: 59808
Number of extensions: 321130
Number of successful extensions: 534
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)