Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1256
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm recept...    32   0.39 
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF068720-5|AAC17788.1|  333|Caenorhabditis elegans Seven tm rece...    28   8.4  
AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm receptor
           protein 1 protein.
          Length = 345

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -3

Query: 519 ISLTRNIFIVLSSFVFYYYLINTYICLNTLLTTSIKN 409
           ISLT  IF+ + S +  Y+ +N+Y+ +N L+ TS+ +
Sbjct: 202 ISLTLMIFVSVYSII--YFAVNSYVAMNKLVLTSVNS 236


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 320 FNKKNLSINYYRSNVIKNNTLNCFINRMFEFFIDVVNN 433
           FN+ +LSIN   S++I N   N F+ R    F+DV NN
Sbjct: 618 FNQGDLSINQSISDLIINLQTNVFMCRP---FVDVYNN 652


>AF068720-5|AAC17788.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 236 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 195 NNQIEVTKTSVLLKTS*FGLKTYFITIQFVFRRSNIIMSEFSKL 64
           N  +  T TS  +  S FG+     T+ F++R   II S F K+
Sbjct: 83  NLPVAFTMTSNAMFCSMFGMSMAMFTLHFIYRYCVIIGSNFVKM 126


>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
           protein Y57E12B.3 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 513 LTRNIFIVLSSFVFYYYLINTYICLNTLLTTSIKNSN 403
           LT NIF  L + +F    +N  +C N +   S  NSN
Sbjct: 479 LTNNIFTKLLTDIFCDQAVNNPLCENFIFAVSGPNSN 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,652,183
Number of Sequences: 27780
Number of extensions: 268022
Number of successful extensions: 607
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)