Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1254
         (806 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3HXB5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.8  
UniRef50_Q4XWR2 Cluster: Putative uncharacterized protein; n=2; ...    34   4.8  
UniRef50_Q8SSE5 Cluster: DNA REPLICATION LICENSING FACTOR OF THE...    33   8.5  

>UniRef50_A3HXB5 Cluster: Putative uncharacterized protein; n=1;
           Algoriphagus sp. PR1|Rep: Putative uncharacterized
           protein - Algoriphagus sp. PR1
          Length = 564

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 311 GIRTL*I*IYRNTIMYLPTSFIFQPFFCPRFLRYRERFYAVIVNRAMTPP 162
           G R+  +  +RN++MY+P   +         LRY  RFY+ +     TPP
Sbjct: 395 GFRSTRVRTFRNSVMYIPNGKVADATIDNHGLRYYRRFYSTLTITYDTPP 444


>UniRef50_Q4XWR2 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 135

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
 Frame = +2

Query: 368 FYLLLPFHISLINVIKY*YALTQLLENSYTSSAN-ASLDFMNIASFISPK*NLIEVHSTL 544
           F+    F++SL       Y  ++++ENS   + +  + + MN+   +S + N     + L
Sbjct: 7   FFFFFFFNVSLFVCRTAKYEDSEIIENSTVKNNDITNKNIMNVLKSVSLEENKKTEKNIL 66

Query: 545 HTFRFYCRIPNVFKNDSD*QITYI------SKKKKPRKFVEVNTNYKLRKK 679
           +   +Y     +    +  Q+ Y       + KKKP+   +VN  Y  RKK
Sbjct: 67  YDLSYYMNFLKILSGINSQQMEYEGIINIDNTKKKPKNIKDVNIIYSSRKK 117


>UniRef50_Q8SSE5 Cluster: DNA REPLICATION LICENSING FACTOR OF THE
           MCM FAMILY; n=1; Encephalitozoon cuniculi|Rep: DNA
           REPLICATION LICENSING FACTOR OF THE MCM FAMILY -
           Encephalitozoon cuniculi
          Length = 708

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = -3

Query: 207 RKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQGVFFS 76
           RK L S+R  GD + IL+ G  G+ KS LLSF ++  E+G++ S
Sbjct: 348 RKELGSSRLRGDIN-ILLAGDPGISKSQLLSFIHRTSERGMYTS 390


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,425,747
Number of Sequences: 1657284
Number of extensions: 13108196
Number of successful extensions: 27140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27127
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)