Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1254
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0868 + 11937652-11937757,11938097-11938671                       31   1.4  
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855...    31   1.4  
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972...    29   4.4  

>03_02_0868 + 11937652-11937757,11938097-11938671
          Length = 226

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 279 KYDYVFTYLIYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIYGILGLLKSTL-LSFHY 106
           +Y  +   L+Y  +   P +S    K+ R    PGDD    +  ++  LK T+ L  HY
Sbjct: 154 EYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTIELRLHY 212


>02_05_0338 -
           28084169-28084366,28084414-28085225,28085565-28085595,
           28085638-28086214,28086439-28087145,28087188-28087228,
           28087253-28087366,28087517-28088108
          Length = 1023

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 279 KYDYVFTYLIYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIYGILGLLKSTL-LSFHY 106
           +Y  +   L+Y  +   P +S    K+ R    PGDD    +  ++  LK T+ L  HY
Sbjct: 806 EYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHY 864


>09_02_0475 +
           9724676-9724936,9725518-9726216,9726273-9726596,
           9726900-9727847
          Length = 743

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 204 KVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQG 88
           K L S   P D S + I G+ GL K++L    +++KE+G
Sbjct: 130 KDLLSQSNPDDLSILPIVGLPGLGKTSLARLVFEDKEEG 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,231,015
Number of Sequences: 37544
Number of extensions: 312067
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)