Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1254
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-1|CAA78468.2|  551|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AY090486-1|AAM11895.1|  551|Caenorhabditis elegans high-affinity...    28   6.8  
Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>Z14092-1|CAA78468.2|  551|Caenorhabditis elegans Hypothetical
           protein R107.1 protein.
          Length = 551

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 776 PYKFILLLSSYILKVTLFLGDSRFS 702
           P  F+ LL+SYI+ V  F+G S F+
Sbjct: 249 PPMFVYLLASYIILVCYFMGPSTFA 273


>AY090486-1|AAM11895.1|  551|Caenorhabditis elegans high-affinity
           dicarboxylate transporterINDY3 protein.
          Length = 551

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 776 PYKFILLLSSYILKVTLFLGDSRFS 702
           P  F+ LL+SYI+ V  F+G S F+
Sbjct: 249 PPMFVYLLASYIILVCYFMGPSTFA 273


>Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical
           protein F02D10.6 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 314 YELIHL*VGRYDILTLFRFYLLLPFHISLINVIKY*YAL 430
           + L+H+    Y + TL   Y+++PFHISL  + ++ Y +
Sbjct: 76  FRLLHMCYNVYILYTLG--YMIVPFHISLYFLFEFTYTV 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,397,839
Number of Sequences: 27780
Number of extensions: 332855
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)