Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1254
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   4.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.4  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   7.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 162 ILIYGILGLLKSTLLSFHYQEKEQGVFFSNAYI 64
           ILI G+  ++       HY  +E  +   N+Y+
Sbjct: 780 ILINGVWMIIDPAKAMHHYPTREDNLLVCNSYV 812


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 177 GDDSAILIYGILGLLKSTLLSFHYQ 103
           GD   + +YG L LL   +L F Y+
Sbjct: 369 GDSVNVQLYGQLDLLVRKVLGFGYE 393


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 349 VVPTYL*MNKLIRELELFKFEFTEI 275
           +VPT   +NK  + LELF    T I
Sbjct: 85  IVPTTQEINKPFKRLELFNITTTTI 109


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 177 GDDSAILIYGILGLLKSTLLSFHYQ 103
           GD   + +YG L LL   +L F Y+
Sbjct: 369 GDSVNVQLYGQLDLLVRKVLGFGYE 393


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 670 EKKIDPSPKSKLNLESPKKSVTFKIYDDNNNINLY 774
           E++    PK   +L +      +  Y++NNN N Y
Sbjct: 72  ERERSKEPKIVSSLSNNYNYSNYNNYNNNNNYNNY 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,817
Number of Sequences: 438
Number of extensions: 4051
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)