Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1254
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At1g65550.1 68414.m07436 xanthine/uracil permease family protein...    29   4.8  
At3g11560.3 68416.m01412 expressed protein                             28   6.3  
At3g11560.2 68416.m01411 expressed protein                             28   6.3  
At3g11560.1 68416.m01410 expressed protein                             28   6.3  

>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 501

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 700 KLNLESPKKSVTFKIYDDNNNINLYGRCAKT 792
           ++ +E  K    F +Y  NN I+LYG C KT
Sbjct: 134 QIQVEVLKHGFDFDVYVGNNLIHLYGTCKKT 164


>At1g65550.1 68414.m07436 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 541

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 346 VPTYL*MNKLIRELELFKFEFTEIRLCIYLPHLFSNLFSAPGFYDIAKGSTQ 191
           +P +L M K +  L+  + +   + LCI L  LF+ L ++ G YD    +TQ
Sbjct: 213 LPRFLKMKKGVMILDGSRCDRYGMILCIPLVWLFAQLLTSSGVYDHKSHTTQ 264


>At3g11560.3 68416.m01412 expressed protein
          Length = 872

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 685 PSPKSKLNLESPKKSVTFKIYDDNNNINL 771
           P P+S  NLE  + S T  + D+NN+  L
Sbjct: 85  PQPRSSSNLEDMRTSFTGSLQDENNSNGL 113


>At3g11560.2 68416.m01411 expressed protein
          Length = 872

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 685 PSPKSKLNLESPKKSVTFKIYDDNNNINL 771
           P P+S  NLE  + S T  + D+NN+  L
Sbjct: 85  PQPRSSSNLEDMRTSFTGSLQDENNSNGL 113


>At3g11560.1 68416.m01410 expressed protein
          Length = 619

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 685 PSPKSKLNLESPKKSVTFKIYDDNNNINL 771
           P P+S  NLE  + S T  + D+NN+  L
Sbjct: 85  PQPRSSSNLEDMRTSFTGSLQDENNSNGL 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,677
Number of Sequences: 28952
Number of extensions: 286348
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)