Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1253
(706 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q06609 Cluster: DNA repair protein RAD51 homolog 1; n=2... 81 3e-14
UniRef50_P25454 Cluster: DNA repair protein RAD51; n=111; Eukary... 68 3e-10
UniRef50_A2DHG2 Cluster: DNA repair protein RAD51 homolog, putat... 60 4e-08
UniRef50_A3KGI2 Cluster: RAD51 homolog; n=1; Mus musculus|Rep: R... 52 1e-05
UniRef50_A6R196 Cluster: DNA repair protein RAD51; n=1; Ajellomy... 49 1e-04
UniRef50_UPI00005020FA Cluster: similar to RAD51 homolog protein... 48 2e-04
UniRef50_Q27297 Cluster: DNA repair protein Rad51 homolog; n=12;... 48 2e-04
UniRef50_Q4S4D7 Cluster: Chromosome 2 SCAF14738, whole genome sh... 46 7e-04
UniRef50_Q14565 Cluster: Meiotic recombination protein DMC1/LIM1... 45 0.002
UniRef50_Q96449 Cluster: Meiotic recombination protein DMC1 homo... 44 0.003
UniRef50_Q7RD33 Cluster: DNA repair protein rhp51; n=1; Plasmodi... 43 0.008
UniRef50_Q3LW29 Cluster: DNA recombination and repair protein; n... 42 0.015
UniRef50_Q8C610 Cluster: Adult male testis cDNA, RIKEN full-leng... 41 0.026
UniRef50_A2ZKR2 Cluster: Putative uncharacterized protein; n=2; ... 41 0.034
UniRef50_O61128 Cluster: Dmc1 homolog; n=11; Eukaryota|Rep: Dmc1... 40 0.060
UniRef50_Q8I9U4 Cluster: Recombinase Rad51; n=7; Aconoidasida|Re... 39 0.14
UniRef50_Q00YW7 Cluster: Meiotic recombination protein DMC1, put... 38 0.24
UniRef50_Q8ID30 Cluster: Putative uncharacterized protein PF13_0... 37 0.55
UniRef50_Q22S24 Cluster: Putative uncharacterized protein; n=1; ... 36 1.3
UniRef50_P25453 Cluster: Meiotic recombination protein DMC1; n=3... 35 2.2
UniRef50_Q4UAC7 Cluster: Meiotic recombination (DMC1-like) prote... 34 3.0
>UniRef50_Q06609 Cluster: DNA repair protein RAD51 homolog 1; n=22;
Eukaryota|Rep: DNA repair protein RAD51 homolog 1 - Homo
sapiens (Human)
Length = 339
Score = 80.6 bits (190), Expect = 3e-14
Identities = 47/93 (50%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Frame = +1
Query: 379 KKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEINNLLLVQRN*IDYWEXX 558
KK LI IKGISEAKADKILAEA+KLVPMGFTTATEFHQ+R+EI + + +
Sbjct: 57 KKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGG 116
Query: 559 XXXXXXXXXXXXXXXA-NPIMSPLAVTCQLPLN 654
I LAVTCQLP++
Sbjct: 117 IETGSITEMFGEFRTGKTQICHTLAVTCQLPID 149
Score = 50.8 bits (116), Expect = 3e-05
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +2
Query: 305 GITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
GI + D+KKLEEAG+HTVE+VAYAPK +KG
Sbjct: 32 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKG 65
Score = 40.7 bits (91), Expect = 0.034
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEGNA 677
Q+TTGSKELD+LL FRTGK TL+ I++ GGEG A
Sbjct: 101 QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 157
>UniRef50_P25454 Cluster: DNA repair protein RAD51; n=111;
Eukaryota|Rep: DNA repair protein RAD51 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 400
Score = 67.7 bits (158), Expect = 3e-10
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = +1
Query: 325 KKA*GSGISYC*ICCLCSKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAE 504
KK SG+ +K L+ IKGISEAKADK+L EA++LVPMGF TA +FH +R+E
Sbjct: 97 KKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSE 156
Query: 505 INNLLLVQRN*ID--YWEXXXXXXXXXXXXXXXXXANPIMSPLAVTCQLPLN 654
+ L +N +D + + LAVTCQ+PL+
Sbjct: 157 LICLTTGSKN-LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLD 207
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +2
Query: 287 QKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
+K NGIT D+KKL E+G HT E+VAYAP+ ++KG
Sbjct: 84 EKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKG 123
>UniRef50_A2DHG2 Cluster: DNA repair protein RAD51 homolog,
putative; n=1; Trichomonas vaginalis G3|Rep: DNA repair
protein RAD51 homolog, putative - Trichomonas vaginalis
G3
Length = 115
Score = 60.5 bits (140), Expect = 4e-08
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507
+KK L+ +KGISEAKADKI+A A+ LVPMGF +AT+++Q R E+
Sbjct: 48 TKKLLVAVKGISEAKADKIMAAAAALVPMGFASATDYNQIRKEM 91
Score = 42.3 bits (95), Expect = 0.011
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +2
Query: 305 GITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
GI +GDIKKL+E GY+TVES+A+ K +KG
Sbjct: 24 GIAAGDIKKLQEGGYNTVESIAFTTKKLLVAVKG 57
>UniRef50_A3KGI2 Cluster: RAD51 homolog; n=1; Mus musculus|Rep:
RAD51 homolog - Mus musculus (Mouse)
Length = 178
Score = 52.4 bits (120), Expect = 1e-05
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +2
Query: 305 GITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
GI + D+KKLEEAGYHTVE+VAYAPK +KG
Sbjct: 32 GINANDVKKLEEAGYHTVEAVAYAPKKELINIKG 65
Score = 47.2 bits (107), Expect = 4e-04
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +1
Query: 439 EASKLVPMGFTTATEFHQKRAEI 507
EA+KLVPMGFTTATEFHQ+R+EI
Sbjct: 120 EAAKLVPMGFTTATEFHQRRSEI 142
Score = 34.3 bits (75), Expect = 3.0
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +1
Query: 379 KKWLITIKGISEAKADKIL 435
KK LI IKGISEAKADKIL
Sbjct: 57 KKELINIKGISEAKADKIL 75
>UniRef50_A6R196 Cluster: DNA repair protein RAD51; n=1; Ajellomyces
capsulatus NAm1|Rep: DNA repair protein RAD51 -
Ajellomyces capsulatus NAm1
Length = 297
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +2
Query: 302 NGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKGYLKRRQIK 430
NG+T+ DIK + + GYHT+ESVAY PK Q+KG +++ K
Sbjct: 32 NGLTARDIKLVIDGGYHTIESVAYTPKRMLEQIKGISEQKATK 74
Score = 33.1 bits (72), Expect = 6.8
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = +1
Query: 379 KKWLITIKGISEAKADKILAEASK 450
K+ L IKGISE KA KILAE SK
Sbjct: 58 KRMLEQIKGISEQKATKILAEGSK 81
>UniRef50_UPI00005020FA Cluster: similar to RAD51 homolog protein
isoform 1 (LOC364752), mRNA; n=2; Mammalia|Rep: similar
to RAD51 homolog protein isoform 1 (LOC364752), mRNA -
Rattus norvegicus
Length = 313
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +1
Query: 382 KWLITIKGISEAKADKILAEASKLVPMGFTTA 477
K LI I +SEAKADKIL EA+KLVPMGF TA
Sbjct: 56 KELIYIMSVSEAKADKILTEAAKLVPMGFITA 87
Score = 39.1 bits (87), Expect = 0.10
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +2
Query: 320 DIKKLEEAGYHTVESVAYAPK 382
D+KKLEEA +H+VE+VAYAPK
Sbjct: 36 DVKKLEEACFHSVEAVAYAPK 56
>UniRef50_Q27297 Cluster: DNA repair protein Rad51 homolog; n=12;
Fungi/Metazoa group|Rep: DNA repair protein Rad51
homolog - Drosophila melanogaster (Fruit fly)
Length = 336
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEINNL 516
+KK L+ I G+ K ++I+ EA+KLVP+GF +A F+Q RA++ L
Sbjct: 53 TKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL 99
Score = 36.7 bits (81), Expect = 0.55
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
QL+TGSKELD+LL FR GK TL+ I Q GGEG
Sbjct: 98 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEG 152
Score = 35.9 bits (79), Expect = 0.97
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 290 KRSGNGITSGDIKKLEEAGYHTVESVAYAPK 382
K G IT+ DIK L++A HTVESVA A K
Sbjct: 24 KLIGGSITAKDIKLLQQASLHTVESVANATK 54
>UniRef50_Q4S4D7 Cluster: Chromosome 2 SCAF14738, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 2 SCAF14738, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 353
Score = 46.4 bits (105), Expect = 7e-04
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +1
Query: 370 LCSKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507
+ ++K L IKG+SEAK DKI A K++ +GF TA+E+ KR +
Sbjct: 36 MTTRKALCNIKGLSEAKVDKIKEAAGKMLNVGFQTASEYSAKRKHV 81
>UniRef50_Q14565 Cluster: Meiotic recombination protein DMC1/LIM15
homolog; n=36; Fungi/Metazoa group|Rep: Meiotic
recombination protein DMC1/LIM15 homolog - Homo sapiens
(Human)
Length = 340
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = +1
Query: 370 LCSKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKR 498
+ +++ L +KG+SEAK DKI A+KL+ GF TA E+ +KR
Sbjct: 53 MTTRRALCNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKR 95
>UniRef50_Q96449 Cluster: Meiotic recombination protein DMC1
homolog; n=111; Eukaryota|Rep: Meiotic recombination
protein DMC1 homolog - Glycine max (Soybean)
Length = 345
Score = 44.4 bits (100), Expect = 0.003
Identities = 26/61 (42%), Positives = 34/61 (55%)
Frame = +1
Query: 325 KKA*GSGISYC*ICCLCSKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAE 504
KK +GI C + +KK L IKG+SEAK DKI A KLV G+ T ++ KR
Sbjct: 46 KKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLVNFGYITGSDALLKRKS 105
Query: 505 I 507
+
Sbjct: 106 V 106
Score = 34.3 bits (75), Expect = 3.0
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +2
Query: 221 KTRVKEGQVYLPKNFQID-----LQKTQKRSGNGITSGDIKKLEEAGYHTVESVAYAPKN 385
K+ GQ+ L + ID + K GI +GD+KKL++AG +T + K
Sbjct: 6 KSEESSGQLQLVEREDIDDDEDLFEAIDKLIAQGINAGDVKKLQDAGIYTCNGLMMHTKK 65
Query: 386 G*SQLKG 406
+ +KG
Sbjct: 66 NLTGIKG 72
>UniRef50_Q7RD33 Cluster: DNA repair protein rhp51; n=1; Plasmodium
yoelii yoelii|Rep: DNA repair protein rhp51 - Plasmodium
yoelii yoelii
Length = 365
Score = 42.7 bits (96), Expect = 0.008
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +1
Query: 343 GISYC*ICCL--CSKKWLITIKGISEAKADKILAEASKLVP-MGFTTATEFHQKRAEI 507
G YC I L +KK L +KGISE K DKIL ASK+ F T + QKR+++
Sbjct: 49 GSGYCTILSLIQATKKELCNVKGISEVKVDKILEVASKIENCSAFITGNQLVQKRSKV 106
>UniRef50_Q3LW29 Cluster: DNA recombination and repair protein; n=1;
Bigelowiella natans|Rep: DNA recombination and repair
protein - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 331
Score = 41.9 bits (94), Expect = 0.015
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEF 486
SKK L +IKG+++ KA+KIL+ A K VP+GF+T +
Sbjct: 47 SKKELYSIKGLNDRKAEKILSLAKKRVPVGFSTLKNY 83
>UniRef50_Q8C610 Cluster: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4930447F14 product:disrupted
meiotic cDNA 1 homolog, full insert sequence; n=32;
Eukaryota|Rep: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4930447F14 product:disrupted
meiotic cDNA 1 homolog, full insert sequence - Mus
musculus (Mouse)
Length = 285
Score = 41.1 bits (92), Expect = 0.026
Identities = 17/43 (39%), Positives = 30/43 (69%)
Frame = +1
Query: 370 LCSKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKR 498
+ +++ L +KG+SEAK +KI A+KL+ GF TA ++ ++R
Sbjct: 53 MTTRRALCNVKGLSEAKVEKIKEAANKLIEPGFLTAFQYSERR 95
>UniRef50_A2ZKR2 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 294
Score = 40.7 bits (91), Expect = 0.034
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 287 QKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
++ +GI + D+KKL++AG TVESV Y+P+ Q+KG
Sbjct: 29 EQLQASGIAALDVKKLKDAGLCTVESVVYSPRKDLLQIKG 68
Score = 36.7 bits (81), Expect = 0.55
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEGNA 677
Q+TTGS+ELD++L FR+GK TL ++Q GGEG A
Sbjct: 95 QVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKA 151
>UniRef50_O61128 Cluster: Dmc1 homolog; n=11; Eukaryota|Rep: Dmc1
homolog - Leishmania major
Length = 364
Score = 39.9 bits (89), Expect = 0.060
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +1
Query: 379 KKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507
+K LI IKG+SEAK DKI+ A ++ +GF T + Q+R+ +
Sbjct: 81 RKDLIQIKGLSEAKVDKIIEAARRVSEVGFITGSSCLQQRSTL 123
>UniRef50_Q8I9U4 Cluster: Recombinase Rad51; n=7; Aconoidasida|Rep:
Recombinase Rad51 - Plasmodium falciparum
Length = 350
Score = 38.7 bits (86), Expect = 0.14
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
+ TTGSK+LD LL FRTGK TL+ IEQSGGEG
Sbjct: 111 KFTTGSKQLDALLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEG 165
Score = 35.1 bits (77), Expect = 1.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 388 LITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507
L IKGISE KA+K+ +L GF A ++H R +
Sbjct: 70 LCAIKGISEQKAEKLKKACKELCNSGFCNAIDYHDARQNL 109
Score = 33.9 bits (74), Expect = 3.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 281 KTQKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKGYLKRRQIK 430
K ++ G D++ L+E G TVE VAYAP +KG +++ K
Sbjct: 34 KIEQLLAKGFVKRDLELLKEGGLQTVECVAYAPMRTLCAIKGISEQKAEK 83
>UniRef50_Q00YW7 Cluster: Meiotic recombination protein DMC1,
putative; n=2; Ostreococcus|Rep: Meiotic recombination
protein DMC1, putative - Ostreococcus tauri
Length = 371
Score = 37.9 bits (84), Expect = 0.24
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Frame = +1
Query: 379 KKWLITIKGISEAKADKILAEASKLVPM----GFTTATEFHQKR 498
+K ++ +KG S+AKADK+L A K++P GF TA E ++R
Sbjct: 86 RKNIVAVKGFSDAKADKVLESALKMLPESESGGFITAAEDCERR 129
>UniRef50_Q8ID30 Cluster: Putative uncharacterized protein PF13_0355;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PF13_0355 - Plasmodium falciparum
(isolate 3D7)
Length = 1182
Score = 36.7 bits (81), Expect = 0.55
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +2
Query: 200 KDLSRKEKTRVKEGQVYLPKNFQIDLQKTQKRSGNGI------TSGDIKKLEEAGYHTVE 361
K+L+RK K VK+G + +N QI L K +K + NGI I K+++ +
Sbjct: 851 KNLTRKAKKVVKKGNDIVKENAQIGLNKVKKGTKNGINKVKKGAKNGINKVKKGTKSGIN 910
Query: 362 SVAYAPKNG*SQLK 403
V KNG +++K
Sbjct: 911 KVKEGAKNGINKVK 924
>UniRef50_Q22S24 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1760
Score = 35.5 bits (78), Expect = 1.3
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +2
Query: 158 TYPALESKISTFQIKDLSRKEKTRVKEGQVYLPKNFQIDLQKTQKRSGNGITSGDIKKLE 337
TY ++S +S + D +K+K+ ++G++++ Q+ LQK+ R I D+ +
Sbjct: 47 TYKKIQSVLSDDKTIDKKKKKKSSDQQGKIFIQDLMQMTLQKSDFRKKQSIGVDDLLQFG 106
Query: 338 EAGYHTVESVAYAPKNG 388
+ T S++ +NG
Sbjct: 107 DQVIWTENSLSSDEENG 123
>UniRef50_P25453 Cluster: Meiotic recombination protein DMC1; n=39;
Eukaryota|Rep: Meiotic recombination protein DMC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 334
Score = 34.7 bits (76), Expect = 2.2
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTAT 480
+++ L IKG+SE K +KI A K++ +GF AT
Sbjct: 50 TRRHLCKIKGLSEVKVEKIKEAAGKIIQVGFIPAT 84
>UniRef50_Q4UAC7 Cluster: Meiotic recombination (DMC1-like) protein,
putative; n=1; Theileria annulata|Rep: Meiotic
recombination (DMC1-like) protein, putative - Theileria
annulata
Length = 409
Score = 34.3 bits (75), Expect = 3.0
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKL-VPMGFTTATEFHQKRAEI 507
+KK L IKG++E K +KI ASKL + F +A + +Q R I
Sbjct: 59 TKKDLCNIKGLTEMKVEKISDSASKLEITNSFISANQLYQLRKSI 103
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,232,141
Number of Sequences: 1657284
Number of extensions: 11681449
Number of successful extensions: 26685
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 25923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26670
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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