Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1253
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   3.2  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   4.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.2  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 215 KEKTRVKEGQVYLPKNFQIDLQKTQKRSGNGITSGDIKKLEEA 343
           K+K+   EG         I L++ Q+RS    T+  + +LE+A
Sbjct: 196 KDKSTDNEGVSDCDSEPGIPLKRKQRRSRTTFTAHQLDELEKA 238


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 281 KTQKRSG--NGITSGDIKKLEEAGYHTVESVAYAPKNG 388
           K  KRS   NG T+GD  ++++       SV    KNG
Sbjct: 75  KRSKRSKRPNGDTNGDTSQVDDQNESLEASVNENSKNG 112


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -1

Query: 232  YPCFFFS*EIFYLECRYLTLQGRICRFT*A*IDRILRSTLLSSNMFIYLFHI 77
            Y   F S +I +L   Y++  G IC      I  +  +T+      IY F++
Sbjct: 981  YTSAFSSEKIVWLHLVYISFLGIICAADVFYICHVCYATIQEVRAKIYFFYL 1032


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,224
Number of Sequences: 336
Number of extensions: 3551
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)