Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1253
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    73   5e-14
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...    48   1e-06
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   6.0  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   8.0  

>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
 Frame = +1

Query: 379 KKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEINNLLLVQRN*IDYWEXX 558
           K+ L+ IKGISEAKADK+L EASKLVPMGFTTATE+H +R+E+  +    +      +  
Sbjct: 79  KRQLLLIKGISEAKADKLLGEASKLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGG 138

Query: 559 XXXXXXXXXXXXXXXA-NPIMSPLAVTCQLPLN 654
                            + I   LAVTCQLP++
Sbjct: 139 VETGSITELFGEFRTGKSQICHTLAVTCQLPID 171



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 24/40 (60%), Positives = 29/40 (72%)
 Frame = +2

Query: 287 QKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
           Q   GNGIT+ DIKK+ EAGY+TVES+AY PK     +KG
Sbjct: 48  QMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLLLIKG 87



 Score = 34.3 bits (75), Expect = 0.017
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 513 LTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
           +TTGSK+LD LL               FRTGK     TL+      I+  GGEG
Sbjct: 124 ITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEG 177


>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = +1

Query: 370 LCSKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507
           + +K++L+ IKG SEAK DK+   ASK+ P  F+TA E  Q R ++
Sbjct: 47  MSTKRFLLKIKGFSEAKVDKLKEAASKMCPANFSTAMEISQNRKKV 92



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 296 SGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKGY 409
           + +GI   DI KL++AG  TV+ V  + K    ++KG+
Sbjct: 22  TAHGIGMTDIIKLKQAGVCTVQGVHMSTKRFLLKIKGF 59


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/61 (21%), Positives = 30/61 (49%)
 Frame = +2

Query: 266 QIDLQKTQKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKGYLKRRQIKY*LKH 445
           +++ +  +  + N IT  +++  +  G HT +S+  AP    S  + ++ R      ++H
Sbjct: 292 EVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTAAIKIIRH 351

Query: 446 L 448
           L
Sbjct: 352 L 352


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 194 QIKDLSRKEKTRVKEGQVYLPKNFQIDLQKTQK-RSGN 304
           Q ++  R E+      +  LPK F +DL++T+  +SGN
Sbjct: 255 QARNQRRLEERAANAVKKLLPKQFLLDLEETKNGKSGN 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,452
Number of Sequences: 5004
Number of extensions: 53785
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)