BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1253 (706 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 73 5e-14 SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 48 1e-06 SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 6.0 SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 8.0 >SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 72.5 bits (170), Expect = 5e-14 Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Frame = +1 Query: 379 KKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEINNLLLVQRN*IDYWEXX 558 K+ L+ IKGISEAKADK+L EASKLVPMGFTTATE+H +R+E+ + + + Sbjct: 79 KRQLLLIKGISEAKADKLLGEASKLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGG 138 Query: 559 XXXXXXXXXXXXXXXA-NPIMSPLAVTCQLPLN 654 + I LAVTCQLP++ Sbjct: 139 VETGSITELFGEFRTGKSQICHTLAVTCQLPID 171 Score = 53.6 bits (123), Expect = 3e-08 Identities = 24/40 (60%), Positives = 29/40 (72%) Frame = +2 Query: 287 QKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406 Q GNGIT+ DIKK+ EAGY+TVES+AY PK +KG Sbjct: 48 QMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLLLIKG 87 Score = 34.3 bits (75), Expect = 0.017 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +3 Query: 513 LTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671 +TTGSK+LD LL FRTGK TL+ I+ GGEG Sbjct: 124 ITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEG 177 >SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces pombe|chr 1|||Manual Length = 332 Score = 48.0 bits (109), Expect = 1e-06 Identities = 21/46 (45%), Positives = 31/46 (67%) Frame = +1 Query: 370 LCSKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507 + +K++L+ IKG SEAK DK+ ASK+ P F+TA E Q R ++ Sbjct: 47 MSTKRFLLKIKGFSEAKVDKLKEAASKMCPANFSTAMEISQNRKKV 92 Score = 27.1 bits (57), Expect = 2.6 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +2 Query: 296 SGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKGY 409 + +GI DI KL++AG TV+ V + K ++KG+ Sbjct: 22 TAHGIGMTDIIKLKQAGVCTVQGVHMSTKRFLLKIKGF 59 >SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosaccharomyces pombe|chr 2|||Manual Length = 1160 Score = 25.8 bits (54), Expect = 6.0 Identities = 13/61 (21%), Positives = 30/61 (49%) Frame = +2 Query: 266 QIDLQKTQKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKGYLKRRQIKY*LKH 445 +++ + + + N IT +++ + G HT +S+ AP S + ++ R ++H Sbjct: 292 EVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTAAIKIIRH 351 Query: 446 L 448 L Sbjct: 352 L 352 >SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 388 Score = 25.4 bits (53), Expect = 8.0 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +2 Query: 194 QIKDLSRKEKTRVKEGQVYLPKNFQIDLQKTQK-RSGN 304 Q ++ R E+ + LPK F +DL++T+ +SGN Sbjct: 255 QARNQRRLEERAANAVKKLLPKQFLLDLEETKNGKSGN 292 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,726,452 Number of Sequences: 5004 Number of extensions: 53785 Number of successful extensions: 142 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 141 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 327172622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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