Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1253
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0287 - 2152179-2152424,2153300-2153339,2153612-2153831,215... 46 4e-05
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209... 46 4e-05
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 43 3e-04
12_02_0419 + 18916995-18917090,18917703-18917851,18917873-189180... 41 0.001
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 28 6.3
>12_01_0287 -
2152179-2152424,2153300-2153339,2153612-2153831,
2153917-2153995,2154087-2154155,2154237-2154329,
2154411-2154477,2154579-2154640,2154729-2154774,
2155359-2155404,2155490-2155547,2155717-2155755,
2155849-2155920,2156067-2156158,2157036-2157135
Length = 442
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/61 (42%), Positives = 34/61 (55%)
Frame = +1
Query: 325 KKA*GSGISYC*ICCLCSKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAE 504
KK +GI C + +KK L IKG+SEAK DKI A KL+ GF T ++ KR
Sbjct: 45 KKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFITGSDLLIKRKS 104
Query: 505 I 507
+
Sbjct: 105 V 105
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 278 QKTQKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
+ K GI SGD+KKL++AG +T + K + +KG
Sbjct: 29 ESIDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKG 71
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
++TTGS+ LD+LL FR+GK TL I GG G
Sbjct: 107 RITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSAQLPIHMHGGNG 161
>11_01_0283 -
2095291-2095566,2095962-2096348,2096523-2096881,
2097275-2097398,2097480-2097548,2098536-2098584,
2099185-2099299,2099823-2099872,2099969-2100106,
2101136-2101197,2102066-2102180,2103433-2103664,
2103748-2103826,2103925-2103993,2104079-2104171,
2104577-2104622,2105223-2105268,2105354-2105411,
2105577-2105615,2105712-2105783,2105930-2106021,
2106824-2106923
Length = 889
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/61 (42%), Positives = 34/61 (55%)
Frame = +1
Query: 325 KKA*GSGISYC*ICCLCSKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAE 504
KK +GI C + +KK L IKG+SEAK DKI A KL+ GF T ++ KR
Sbjct: 45 KKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFMTGSDLLIKRKS 104
Query: 505 I 507
+
Sbjct: 105 V 105
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 278 QKTQKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
+ K GI SGD+KKL++AG +T + K + +KG
Sbjct: 29 ESIDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKG 71
>11_06_0395 +
23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +2
Query: 287 QKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
++ +GI + D+KKL+++G +TVESVAY P+ Q+KG
Sbjct: 26 EQLQASGIAALDVKKLKDSGLYTVESVAYTPRKDLLQIKG 65
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +1
Query: 325 KKA*GSGISYC*ICCLCSKKWLITIKGISEAKADKILAEASKLV 456
KK SG+ +K L+ IKGISEAK DKI+ EA K V
Sbjct: 39 KKLKDSGLYTVESVAYTPRKDLLQIKGISEAKVDKIV-EAGKNV 81
>12_02_0419 +
18916995-18917090,18917703-18917851,18917873-18918063,
18918178-18918269,18918456-18918550,18918920-18919049,
18919178-18919219
Length = 264
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 287 QKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
++ +GI + D+KKL++AG TVESV Y+P+ Q+KG
Sbjct: 29 EQLQASGIAALDVKKLKDAGLCTVESVVYSPRKDLLQIKG 68
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEGNA 677
Q+TTGS+ELD++L FR+GK TL ++Q GGEG A
Sbjct: 132 QVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKA 188
Score = 35.9 bits (79), Expect = 0.031
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 427 KILAEASKLVPMGFTTATEFHQKRAEINNLLLVQRN*IDYWEXXXXXXXXXXXXXXXXXA 606
K LA ASKLVP+GFT+A++ H +R EI + R +
Sbjct: 105 KCLA-ASKLVPLGFTSASQLHAQRLEIIQVTTGSRELDKILDGGIETGSITEIYGEFRSG 163
Query: 607 -NPIMSPLAVTCQLPLN 654
+ L VTCQLPL+
Sbjct: 164 KTQLCHTLCVTCQLPLD 180
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 379 KKWLITIKGISEAKADKILAEASKLVPMGFTTATE 483
+K L+ IKGISEAK DKI+ E K F A+E
Sbjct: 60 RKDLLQIKGISEAKVDKII-EGGKEHSNAFLLASE 93
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 248 YLPKNFQIDLQKTQKRSGNGITSGDIKKLEEAGYHTVESVAYAP 379
YL +ID+ GN + G ++ +E+AG H+ +S P
Sbjct: 837 YLIDAIEIDVDALADSVGNVVIGGIMEHIEQAGIHSGDSACSLP 880
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,534,792
Number of Sequences: 37544
Number of extensions: 306199
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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