Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1253
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43381| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   3e-13
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)                 28   6.4  
SB_37133| Best HMM Match : rve (HMM E-Value=0.23)                      28   8.5  

>SB_43381| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/43 (76%), Positives = 40/43 (93%)
 Frame = +1

Query: 379 KKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507
           KK L++IKGISEAKADKI+ E+SKLVPMGFTTATEFH +RA++
Sbjct: 57  KKHLLSIKGISEAKADKIINESSKLVPMGFTTATEFHMRRADM 99



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/40 (40%), Positives = 27/40 (67%)
 Frame = +2

Query: 287 QKRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
           +K   +GI++ D+ KL +AG+HT+E++ Y PK     +KG
Sbjct: 26  RKLEEHGISANDVNKLIDAGFHTIEAITYTPKKHLLSIKG 65



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 513 LTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
           +TT +KELD+LL               FRTGK     TL+      I+  G EG
Sbjct: 101 ITTDTKELDKLLQGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDHGGAEG 154


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 116 SAPKNPIYLCLSKSTYPALESKISTFQIKD 205
           S P   IY+C+ K +Y      I  FQ++D
Sbjct: 788 SPPDTLIYMCMRKGSYDRAHQVIKMFQLQD 817


>SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)
          Length = 857

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 116 SAPKNPIYLCLSKSTYPALESKISTFQIKD 205
           S P   IY+C+ K +Y      I  FQ++D
Sbjct: 522 SPPDTLIYMCMRKGSYDRAHQVIKMFQLQD 551


>SB_37133| Best HMM Match : rve (HMM E-Value=0.23)
          Length = 359

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 254 PKNFQIDLQKTQKRSGNGITSGDIKKLEEAG 346
           P+  Q  L + QK +  G+T  ++ KLEE G
Sbjct: 98  PQRLQRMLMRLQKTAYKGLTHANLSKLEEVG 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,205,167
Number of Sequences: 59808
Number of extensions: 354414
Number of successful extensions: 745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)