Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1253
(706 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L41342-1|AAA64873.1| 336|Drosophila melanogaster protein ( Dros... 48 9e-06
D37788-1|BAA07039.1| 336|Drosophila melanogaster RecA protein h... 48 9e-06
D17726-1|BAA04580.1| 336|Drosophila melanogaster Rad51 protein. 48 9e-06
AE014297-4532|AAF57005.1| 336|Drosophila melanogaster CG7948-PA... 48 9e-06
BT001791-1|AAN71546.1| 284|Drosophila melanogaster RH24133p pro... 43 4e-04
AE014297-4533|AAN14213.1| 279|Drosophila melanogaster CG7948-PB... 43 4e-04
>L41342-1|AAA64873.1| 336|Drosophila melanogaster protein (
Drosophila melanogaster(clone pDmR2210) RAD51 homolog
gene, complete cds. ).
Length = 336
Score = 48.4 bits (110), Expect = 9e-06
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEINNL 516
+KK L+ I G+ K ++I+ EA+KLVP+GF +A F+Q RA++ L
Sbjct: 53 TKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL 99
Score = 36.7 bits (81), Expect = 0.031
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
QL+TGSKELD+LL FR GK TL+ I Q GGEG
Sbjct: 98 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEG 152
Score = 35.9 bits (79), Expect = 0.054
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 290 KRSGNGITSGDIKKLEEAGYHTVESVAYAPK 382
K G IT+ DIK L++A HTVESVA A K
Sbjct: 24 KLIGGSITAKDIKLLQQASLHTVESVANATK 54
>D37788-1|BAA07039.1| 336|Drosophila melanogaster RecA protein
homologue protein.
Length = 336
Score = 48.4 bits (110), Expect = 9e-06
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEINNL 516
+KK L+ I G+ K ++I+ EA+KLVP+GF +A F+Q RA++ L
Sbjct: 53 TKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL 99
Score = 36.7 bits (81), Expect = 0.031
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
QL+TGSKELD+LL FR GK TL+ I Q GGEG
Sbjct: 98 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEG 152
Score = 35.9 bits (79), Expect = 0.054
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 290 KRSGNGITSGDIKKLEEAGYHTVESVAYAPK 382
K G IT+ DIK L++A HTVESVA A K
Sbjct: 24 KLIGGSITAKDIKLLQQASLHTVESVANATK 54
>D17726-1|BAA04580.1| 336|Drosophila melanogaster Rad51 protein.
Length = 336
Score = 48.4 bits (110), Expect = 9e-06
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEINNL 516
+KK L+ I G+ K ++I+ EA+KLVP+GF +A F+Q RA++ L
Sbjct: 53 TKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL 99
Score = 36.7 bits (81), Expect = 0.031
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
QL+TGSKELD+LL FR GK TL+ I Q GGEG
Sbjct: 98 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEG 152
Score = 35.9 bits (79), Expect = 0.054
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 290 KRSGNGITSGDIKKLEEAGYHTVESVAYAPK 382
K G IT+ DIK L++A HTVESVA A K
Sbjct: 24 KLIGGSITAKDIKLLQQASLHTVESVANATK 54
>AE014297-4532|AAF57005.1| 336|Drosophila melanogaster CG7948-PA,
isoform A protein.
Length = 336
Score = 48.4 bits (110), Expect = 9e-06
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEINNL 516
+KK L+ I G+ K ++I+ EA+KLVP+GF +A F+Q RA++ L
Sbjct: 53 TKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL 99
Score = 36.7 bits (81), Expect = 0.031
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
QL+TGSKELD+LL FR GK TL+ I Q GGEG
Sbjct: 98 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEG 152
Score = 35.9 bits (79), Expect = 0.054
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 290 KRSGNGITSGDIKKLEEAGYHTVESVAYAPK 382
K G IT+ DIK L++A HTVESVA A K
Sbjct: 24 KLIGGSITAKDIKLLQQASLHTVESVANATK 54
>BT001791-1|AAN71546.1| 284|Drosophila melanogaster RH24133p
protein.
Length = 284
Score = 43.2 bits (97), Expect = 4e-04
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +1
Query: 391 ITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEINNL 516
+ I G+ K ++I+ EA+KLVP+GF +A F+Q RA++ L
Sbjct: 1 MAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL 42
Score = 36.7 bits (81), Expect = 0.031
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
QL+TGSKELD+LL FR GK TL+ I Q GGEG
Sbjct: 41 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEG 95
>AE014297-4533|AAN14213.1| 279|Drosophila melanogaster CG7948-PB,
isoform B protein.
Length = 279
Score = 43.2 bits (97), Expect = 4e-04
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +1
Query: 391 ITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEINNL 516
+ I G+ K ++I+ EA+KLVP+GF +A F+Q RA++ L
Sbjct: 1 MAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL 42
Score = 36.7 bits (81), Expect = 0.031
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
QL+TGSKELD+LL FR GK TL+ I Q GGEG
Sbjct: 41 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEG 95
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,871,689
Number of Sequences: 53049
Number of extensions: 519970
Number of successful extensions: 1017
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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