Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1253
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical ... 50 1e-06
AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical ... 50 1e-06
AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short i... 50 1e-06
AB011382-1|BAA24982.1| 357|Caenorhabditis elegans RecA/Rad51/Dm... 50 1e-06
U80952-5|AAB38092.1| 424|Caenorhabditis elegans Hypothetical pr... 31 1.1
U29488-2|AAA68774.2| 422|Caenorhabditis elegans Hypothetical pr... 31 1.1
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 29 2.4
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL032639-7|CAA21631.2| 465|Caenorhabditis elegans Hypothetical ... 28 5.7
U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL021487-8|CAB76733.1| 320|Caenorhabditis elegans Hypothetical ... 27 9.9
>AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical
protein Y43C5A.6b protein.
Length = 357
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507
+++ L +KGIS+ KA+KI+ EA K V MGFTT E H KR+++
Sbjct: 72 TRRELRNVKGISDQKAEKIMKEAMKFVQMGFTTGAEVHVKRSQL 115
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 290 KRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
K +GI+SGDI KL+EAGY+T ES+A+ + +KG
Sbjct: 43 KLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKG 81
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
Q+ TGS LDRLL +RTGK +L+ I+ GGEG
Sbjct: 117 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 171
>AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical
protein Y43C5A.6a protein.
Length = 395
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507
+++ L +KGIS+ KA+KI+ EA K V MGFTT E H KR+++
Sbjct: 110 TRRELRNVKGISDQKAEKIMKEAMKFVQMGFTTGAEVHVKRSQL 153
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 290 KRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
K +GI+SGDI KL+EAGY+T ES+A+ + +KG
Sbjct: 81 KLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKG 119
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
Q+ TGS LDRLL +RTGK +L+ I+ GGEG
Sbjct: 155 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 209
>AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short
isoform protein.
Length = 357
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507
+++ L +KGIS+ KA+KI+ EA K V MGFTT E H KR+++
Sbjct: 72 TRRELRNVKGISDQKAEKIMKEAMKFVQMGFTTGAEVHVKRSQL 115
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 290 KRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
K +GI+SGDI KL+EAGY+T ES+A+ + +KG
Sbjct: 43 KLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKG 81
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
Q+ TGS LDRLL +RTGK +L+ I+ GGEG
Sbjct: 117 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 171
>AB011382-1|BAA24982.1| 357|Caenorhabditis elegans
RecA/Rad51/Dmc1-like protein protein.
Length = 357
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +1
Query: 376 SKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEI 507
+++ L +KGIS+ KA+KI+ EA K V MGFTT E H KR+++
Sbjct: 72 TRRELRNVKGISDQKAEKIMKEAMKFVQMGFTTGAEVHVKRSQL 115
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 290 KRSGNGITSGDIKKLEEAGYHTVESVAYAPKNG*SQLKG 406
K +GI+SGDI KL+EAGY+T ES+A+ + +KG
Sbjct: 43 KLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKG 81
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 QLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKPNYV-TLSSHLPATIEQSGGEG 671
Q+ TGS LDRLL +RTGK +L+ I+ GGEG
Sbjct: 117 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 171
>U80952-5|AAB38092.1| 424|Caenorhabditis elegans Hypothetical
protein F54H5.2 protein.
Length = 424
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 239 GQVYLPKNFQIDLQKTQKRSGNGITSGDIKKLEEA 343
G VYL KN + + + K NG G + KLE A
Sbjct: 43 GSVYLVKNLEDETEAAMKAESNGAAGGCVLKLEVA 77
>U29488-2|AAA68774.2| 422|Caenorhabditis elegans Hypothetical
protein C56C10.6 protein.
Length = 422
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 239 GQVYLPKNFQIDLQKTQKRSGNGITSGDIKKLEEA 343
G VYL KN + + + K NG G + KLE A
Sbjct: 36 GSVYLVKNLEDETEAAMKAESNGAAGGCVLKLEVA 70
>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical protein
T04G9.1 protein.
Length = 1610
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 203 DLSRKEKTRVKEGQVYLPKNFQIDLQKTQKRSG 301
+L K + V+ GQV LPK F++ L+ ++R G
Sbjct: 1028 NLDSKLQNHVRYGQVSLPKTFELKLKSIEQRLG 1060
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 600 TGKPNYVTLSSHLPATIEQSGGEGNACTSIQ 692
TG P + L+ L A I SGG+GN + +Q
Sbjct: 144 TGDPQKIELAKQLVAEILNSGGDGNGGSGLQ 174
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 600 TGKPNYVTLSSHLPATIEQSGGEGNACTSIQ 692
TG P + L+ L A I SGG+GN + +Q
Sbjct: 207 TGDPQKIELAKQLVAEILNSGGDGNGGSGLQ 237
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 600 TGKPNYVTLSSHLPATIEQSGGEGNACTSIQ 692
TG P + L+ L A I SGG+GN + +Q
Sbjct: 185 TGDPQKIELAKQLVAEILNSGGDGNGGSGLQ 215
>AL032639-7|CAA21631.2| 465|Caenorhabditis elegans Hypothetical
protein Y38F1A.6 protein.
Length = 465
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 299 GNGITSGDIKKLEEAGYHTVESVAYAPKN 385
G G DI+ L EA H+V ++A +PK+
Sbjct: 420 GMGFEFSDIEMLTEAASHSVPNIAISPKS 448
>U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical
protein ZK180.3a protein.
Length = 522
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 339 SSSFFISPDVMPLPERFCVFWRSI*KFLGR*T*PSFTLVFSFLERSFIWNVDILLSKAGY 160
+S+ FI +++ + R WR+I ++LG PSFT V + S V +L + Y
Sbjct: 414 NSAGFIVANIINMSVRIIYNWRTIREYLGD-KCPSFTEVLPTGQTSIFLGVSLLATSFTY 472
Query: 159 V 157
+
Sbjct: 473 L 473
>AL021487-8|CAB76733.1| 320|Caenorhabditis elegans Hypothetical
protein Y45F10B.14 protein.
Length = 320
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 614 IGFASTEFTKYFSYRTSFYT 555
IG+ S F KYF YR F++
Sbjct: 72 IGYISNGFCKYFGYRVCFFS 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,627
Number of Sequences: 27780
Number of extensions: 287971
Number of successful extensions: 628
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -