Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1253
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   1.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.1  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   4.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   4.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   4.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 266 QIDLQKTQKRSGNGITSGDIKKLEEAGYHTVESVAYAP 379
           +++ +  +    N IT  +++ ++  G HT ES+  AP
Sbjct: 42  EVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAP 79


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 701 NVLLYRCTCITLSTRLFNGSWQVTAKGDIIGFASTEFTKYFSY 573
           ++++Y C  +   + L +G+W   A   I G  S  FT Y  Y
Sbjct: 530 DLVVYACNVV--GSGLSHGNWIYPASMTIPGSNSAVFTNYKLY 570


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/60 (20%), Positives = 25/60 (41%)
 Frame = +2

Query: 188 TFQIKDLSRKEKTRVKEGQVYLPKNFQIDLQKTQKRSGNGITSGDIKKLEEAGYHTVESV 367
           T + +   RKE+ R KE ++    +           + N   + + KKL+    + +E +
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/60 (20%), Positives = 25/60 (41%)
 Frame = +2

Query: 188 TFQIKDLSRKEKTRVKEGQVYLPKNFQIDLQKTQKRSGNGITSGDIKKLEEAGYHTVESV 367
           T + +   RKE+ R KE ++    +           + N   + + KKL+    + +E +
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/60 (20%), Positives = 25/60 (41%)
 Frame = +2

Query: 188 TFQIKDLSRKEKTRVKEGQVYLPKNFQIDLQKTQKRSGNGITSGDIKKLEEAGYHTVESV 367
           T + +   RKE+ R KE ++    +           + N   + + KKL+    + +E +
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/60 (20%), Positives = 25/60 (41%)
 Frame = +2

Query: 188 TFQIKDLSRKEKTRVKEGQVYLPKNFQIDLQKTQKRSGNGITSGDIKKLEEAGYHTVESV 367
           T + +   RKE+ R KE ++    +           + N   + + KKL+    + +E +
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 56  LREWNKLEFIYSISCAL 6
           + EW K+ F+Y + C L
Sbjct: 328 MSEWVKVVFLYWLPCIL 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,156
Number of Sequences: 438
Number of extensions: 3613
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)