Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1252
(787 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicas... 46 3e-07
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 25 0.69
AJ307577-1|CAC84070.1| 301|Tribolium castaneum dachshund protein. 24 1.6
AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 22 4.8
AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 22 4.8
DQ659249-1|ABG47447.1| 383|Tribolium castaneum chitinase 9 prot... 22 6.4
AY873915-1|AAW67571.2| 384|Tribolium castaneum chitinase 16 pro... 22 6.4
AY873914-1|AAW67570.1| 384|Tribolium castaneum chitinase 3 prot... 22 6.4
EF633444-1|ABR32189.1| 721|Tribolium castaneum heat shock prote... 21 8.4
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 21 8.4
>AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicase
protein.
Length = 580
Score = 46.4 bits (105), Expect = 3e-07
Identities = 28/82 (34%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 266 IRQGLVESKLD-IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 442
I G+ KLD IE++ ++P + +FE L+P+LL+ V G+ P+ IQ+ A+P
Sbjct: 132 ITTGVNFMKLDEIEVKVTGNDAPP-PITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIP 190
Query: 443 TLLADPPQNMIAQSQSGTGKTA 508
+L+ +++++ +Q+G+GKTA
Sbjct: 191 VILSG--RDLMSCAQTGSGKTA 210
Score = 36.3 bits (80), Expect = 3e-04
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 538 DSNKNYPQVLCLSPTYELAIQTGEVAAKMA-KFCPEIKLKYAVRGEELPRGSKITD-HIL 711
++N P V+ +SPT ELAIQ + K A ++ + Y RG + HIL
Sbjct: 230 ENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHIL 289
Query: 712 IGTPGKMFDW 741
+ TPG++ D+
Sbjct: 290 VATPGRLKDF 299
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 25.0 bits (52), Expect = 0.69
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 175 SPATLFEISNSSAFCPHWL 119
SPA+L IS S F P WL
Sbjct: 197 SPASLPSISPSGGFLPKWL 215
>AJ307577-1|CAC84070.1| 301|Tribolium castaneum dachshund protein.
Length = 301
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 105 VINMASQWGQKAEELEISNKVAGLGLDKKHNQETDSDDVP 224
V+N++ G A LE + ++ D +Q+ D D+P
Sbjct: 213 VLNLSKSGGGSAGSLEDDDNISDPEDDDDKDQDMDEGDLP 252
>AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane
transporter protein.
Length = 669
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 142 KSWRFQIKLQGWAWIKNIIKKQILMMYLIPLMQPILL 252
+S++ K WA K ++ + IL ++ PL+ + L
Sbjct: 383 ESFKSPYKASCWAQFKAVLWRSILAVFKEPLLIKVRL 419
>AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane
transporter white protein.
Length = 669
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 142 KSWRFQIKLQGWAWIKNIIKKQILMMYLIPLMQPILL 252
+S++ K WA K ++ + IL ++ PL+ + L
Sbjct: 383 ESFKSPYKASCWAQFKAVLWRSILAVFKEPLLIKVRL 419
>DQ659249-1|ABG47447.1| 383|Tribolium castaneum chitinase 9
protein.
Length = 383
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 371 PNLLKGVYAMGFNAPSKIQ 427
P+++KG +GF+ P IQ
Sbjct: 321 PHIVKGNQWLGFDDPKSIQ 339
>AY873915-1|AAW67571.2| 384|Tribolium castaneum chitinase 16
protein.
Length = 384
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 371 PNLLKGVYAMGFNAPSKIQ 427
P+++KG +GF+ P IQ
Sbjct: 322 PHIVKGNQWLGFDDPKSIQ 340
>AY873914-1|AAW67570.1| 384|Tribolium castaneum chitinase 3
protein.
Length = 384
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 371 PNLLKGVYAMGFNAPSKIQ 427
P+++KG +GF+ P IQ
Sbjct: 322 PHIVKGNQWLGFDDPKSIQ 340
>EF633444-1|ABR32189.1| 721|Tribolium castaneum heat shock protein
90 protein.
Length = 721
Score = 21.4 bits (43), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 664 RGEELPRGSKITDHI 708
RGE L RG+KI H+
Sbjct: 169 RGEPLGRGTKIVLHM 183
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 505 CSFVLAMLSRVDSNKNYPQ 561
C+ + S V+SN+N PQ
Sbjct: 729 CAICVNATSLVESNRNVPQ 747
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,513
Number of Sequences: 336
Number of extensions: 4052
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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