Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1252
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 105 7e-24
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 62 7e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 56 8e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 52 1e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 42 8e-05
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 42 1e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 40 3e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 40 4e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 40 5e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 40 5e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 39 7e-04
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 38 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.011
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 35 0.015
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 34 0.020
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 32 0.11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 29 0.76
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 26 5.3
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 26 5.3
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 7.0
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 9.3
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 105 bits (252), Expect = 7e-24
Identities = 49/75 (65%), Positives = 60/75 (80%)
Frame = +2
Query: 284 ESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP 463
E ++ + + DPNSPL+SVK+FE L LKP LLKG+Y+M F PSKIQE ALP LL++PP
Sbjct: 94 EVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPP 153
Query: 464 QNMIAQSQSGTGKTA 508
+NMI QSQSGTGKTA
Sbjct: 154 RNMIGQSQSGTGKTA 168
Score = 70.5 bits (165), Expect = 2e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F L MLSRVD++ PQ +CL+P+ ELA Q +V +M K+ E+K + ++ + +
Sbjct: 166 KTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY-TEVKTAFGIK-DSV 223
Query: 679 PRGSKITDHILIGTPGKMFD 738
P+G+KI I+IGTPG + D
Sbjct: 224 PKGAKIDAQIVIGTPGTVMD 243
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 62.5 bits (145), Expect = 7e-11
Identities = 28/56 (50%), Positives = 43/56 (76%)
Frame = +2
Query: 341 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
+ TF+ ++LKP LL+G+YA GF PS IQ+ A+ +L + ++++AQ+QSGTGKTA
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTA 71
Score = 36.7 bits (81), Expect = 0.004
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F +++L ++D++ Q L L+PT ELA Q +V + ++ +A G L
Sbjct: 69 KTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLM-NVEC-HACIGGTL 126
Query: 679 PRGS----KITDHILIGTPGKMFD 738
R + H+++GTPG++ D
Sbjct: 127 VRDDMAALQAGVHVVVGTPGRVHD 150
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 55.6 bits (128), Expect = 8e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +2
Query: 338 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
+V +FE ++LK +LL+G+YA G+ PS +Q A+ + +++IAQ+QSGTGKTA
Sbjct: 19 AVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG--RDVIAQAQSGTGKTA 73
Score = 39.1 bits (87), Expect = 7e-04
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F + +L +D + Q L LSPT ELA+Q V + ++ + G +
Sbjct: 71 KTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM-NVQCHACIGGTSV 129
Query: 679 PRGSKITD---HILIGTPGKMFD 738
K D H++ GTPG++ D
Sbjct: 130 GNDIKKLDYGQHVVSGTPGRVTD 152
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 51.6 bits (118), Expect = 1e-07
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +FV+ L +VD+ K+ Q L L PT ELA+QT +V + K +K+ G L
Sbjct: 94 KTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHM-NVKVMVTTGGTTL 152
Query: 679 PRGSKI----TDHILIGTPGKMFD 738
R I T HI++GTPG++ D
Sbjct: 153 -RDDIIRLNDTVHIVVGTPGRVLD 175
Score = 48.8 bits (111), Expect = 9e-07
Identities = 23/53 (43%), Positives = 37/53 (69%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
FE +LK LL G++ GF PS IQE ++P L+ ++++A++++GTGKTA
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSG--RDILARAKNGTGKTA 96
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 42.3 bits (95), Expect = 8e-05
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = +2
Query: 338 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
S KTF +L P L + ++ F P+ +Q +P LA ++++AQ+++G+GKTA
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIP--LALEGKDLVAQARTGSGKTA 66
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 514 VLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC 636
+L ++D N+ L L PT ELA Q V K+ FC
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFC 115
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/53 (33%), Positives = 34/53 (64%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
F+++ L LL+ ++ GF AP+ IQ +P LL ++++ +++G+GKTA
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG--RDVVGMARTGSGKTA 121
Score = 29.5 bits (63), Expect = 0.57
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSN--KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGE 672
K +FV+ M+ + S + + L LSP ELA+QT +V +K +++ V G
Sbjct: 119 KTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVGGV 177
Query: 673 ELPRGSKITD---HILIGTPGK 729
L + I++ TPG+
Sbjct: 178 SLEEQFSLLSGKPDIVVATPGR 199
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 40.3 bits (90), Expect = 3e-04
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +1
Query: 517 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG---EELPRG 687
L L+ + NK+ P+VL +SPT ELAIQT E + + +K G E R
Sbjct: 224 LQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQ-GTNLKAVVVYGGAPKSEQARA 282
Query: 688 SKITDHILIGTPGKMFD 738
+K ++IGTPG++ D
Sbjct: 283 AK-NASVIIGTPGRLLD 298
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
F LKP LL+ + GF PS++Q+ +P + +++ Q++SG GKTA
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILG--TDVLCQAKSGMGKTA 103
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K FVL+ L +++ VL L T ELA Q A+ +K+ P+++ G +
Sbjct: 101 KTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINI 160
Query: 679 PRGSKI------TDHILIGTPGKM 732
+ + + HI++ TPG++
Sbjct: 161 KQDMEAFKDKSKSPHIVVATPGRL 184
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/54 (31%), Positives = 36/54 (66%)
Frame = +2
Query: 347 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
+F++++L +LKG+ +GF P++IQ+ +P L ++++ + +G+GKTA
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTA 311
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/55 (32%), Positives = 35/55 (63%)
Frame = +2
Query: 341 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
++ F L L N+ K + MGF ++IQ+ ++P LLA ++++ +++G+GKT
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG--RDVLGAAKTGSGKT 140
Score = 30.3 bits (65), Expect = 0.33
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +1
Query: 547 KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE---IKLKYAVRGEELPRGSKITDHILIG 717
+N V+ +SPT ELA+Q VA ++ K+ + I + A R E + K ++L+
Sbjct: 159 RNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGV-NLLVA 217
Query: 718 TPGKMFD 738
TPG++ D
Sbjct: 218 TPGRLLD 224
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +2
Query: 344 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
KTF+ L + L + +GF P+ IQ+ A+P +L +++I +Q+G+GKTA
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVL--NKRDVIGLAQTGSGKTA 98
Score = 25.8 bits (54), Expect = 7.0
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F L ++ + +N + + L+PT ELA Q E + ++ V G ++
Sbjct: 96 KTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDM 154
Query: 679 PRGSKITD---HILIGTPGKMFD 738
+ H+L+ TPG++ D
Sbjct: 155 VTQAVALSKKPHVLVCTPGRLMD 177
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +2
Query: 341 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
V TFE +LK V +GF AP+ IQ+ A P +A ++M+ S +G+GKT
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWP--MAMSGRDMVGISATGSGKT 173
Score = 34.3 bits (75), Expect = 0.020
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGT 720
P VL L+PT ELA+Q + + KF +++ +PRG +I D I I T
Sbjct: 196 PIVLVLAPTRELAVQ---IQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIAT 252
Query: 721 PGKMFD 738
PG++ D
Sbjct: 253 PGRLLD 258
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.1 bits (77), Expect = 0.011
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +1
Query: 514 VLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSK 693
VL R++S+K + +L SPT ELA+Q E A K+ + I++ YA+ G R
Sbjct: 101 VLKGKPRLNSSKIHSVIL--SPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREEN 157
Query: 694 I----TDHILIGTPGKMFD 738
++LI TPG++ D
Sbjct: 158 AIRRGNANLLIATPGRLED 176
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 353 EALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
E L + GF + +Q+ L + + +N + Q+++GTGKT
Sbjct: 41 EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNE-ENAVVQAKTGTGKT 90
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 34.7 bits (76), Expect = 0.015
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA--VRGE 672
K +F L ++ + + + L L+PT ELAIQ E + A + LK+A V G
Sbjct: 57 KTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDE---QFAALGANLNLKHALIVGGM 113
Query: 673 ELPRGS---KITDHILIGTPGKMFD 738
++ R S H+++ TPG++ D
Sbjct: 114 DMIRQSIDLSKRPHVVVATPGRLAD 138
Score = 32.3 bits (70), Expect = 0.081
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 344 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
K+F L + P L+ + A+ P+ IQE + +L +N I +++G+GKTA
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEG--RNCIGGAKTGSGKTA 59
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 34.3 bits (75), Expect = 0.020
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +2
Query: 239 SRYFSLMKIIRQGLVESKL-DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVY-AMGFNA 412
S +FS + + Q L ++++ +I ++ N+P+ + F + L L + M +A
Sbjct: 105 SEHFS--QDVGQNLEDNQISNIGTTKEASNAPIKTTN-FAGVQLDTQLADHLNNKMNISA 161
Query: 413 PSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
P+ IQ LP LL ++ ++Q+G+GKT
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKT 192
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/65 (24%), Positives = 36/65 (55%)
Frame = +2
Query: 347 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAPLF*RC 526
+F+++++ L V A GF + +Q A+P L + ++++ ++ +G+GKT C
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKN--KDLVVEAVTGSGKTLAYLLPC 59
Query: 527 *AELT 541
++T
Sbjct: 60 FDKVT 64
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 29.1 bits (62), Expect = 0.76
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 565 LCLSPTYELAIQTGEVAAKMAK---FCPEIKLKYAVRGEELPRGSKITDHILIGTPGKM 732
L +SPT ELAIQT E K+ + F + + EE R S++ +IL+ TPG++
Sbjct: 115 LVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM--NILVCTPGRL 171
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 338 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 475
S F A LK + + A N P+ ++ T + T+L P QN++
Sbjct: 357 SENPFIAHELKQTSVNEITAHVINEPASLKLTTISTILHAPLQNLL 402
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 354 SNVFTEYNGELGSFLCISISSLDSTRPCRMIFIKEK-YR 241
SNV T++N + ++S+ D + R+ F KEK YR
Sbjct: 591 SNVQTDHNSPCNTIYVGNLSNPDQEKKLRLAFSKEKGYR 629
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 239 SRYFSLMKIIRQGLVESKLDIEI 307
SRY +K++ + L++ KLD E+
Sbjct: 480 SRYVPTLKVVLENLIQDKLDPEL 502
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 547 KNYPQVLCLSPTYELAIQTGEVAAKMAKFC 636
K YP L L+PT EL Q E + KFC
Sbjct: 253 KAYPTTLILAPTRELVCQIHE---ESRKFC 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,114
Number of Sequences: 5004
Number of extensions: 69701
Number of successful extensions: 234
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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