Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1252
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 101 8e-22
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 101 8e-22
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 101 8e-22
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 61 1e-09
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 60 1e-09
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 53 2e-07
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 53 2e-07
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 42 5e-04
Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical pr... 41 0.001
U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA he... 41 0.001
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 40 0.003
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 39 0.004
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 39 0.004
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 39 0.004
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 38 0.006
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 38 0.006
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 38 0.008
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 38 0.008
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 38 0.008
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 38 0.008
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 37 0.019
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 36 0.033
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 36 0.033
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 36 0.043
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 35 0.057
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 33 0.31
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 33 0.31
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 31 1.2
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 6.6
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 8.7
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 8.7
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 101 bits (241), Expect = 8e-22
Identities = 50/141 (35%), Positives = 83/141 (58%)
Frame = +2
Query: 299 IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 478
+++QR+DP SPLYS+ +F L LKP +LK + M F P++IQETALP LL +PP N+IA
Sbjct: 194 VDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA 253
Query: 479 QSQSGTGKTAPLF*RC*AELTLTRIILKYCVLVPHMN*PYKLVKLLQKWQNFVLK*S*SM 658
Q+QSGTGKTA + + + + L P + ++ ++++K F+
Sbjct: 254 QAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHY 313
Query: 659 PLEGKNFPGVQKSQITFLLVL 721
++G N ++ ++T +V+
Sbjct: 314 AIKGGNMAAMRGRKLTEQIVI 334
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +FVL ML R+D N PQ +CL+PT ELA Q GEV KM KF +K+ YA++G +
Sbjct: 261 KTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNM 320
Query: 679 P--RGSKITDHILIGTPGKMFDWGVKF 753
RG K+T+ I+IGTPG D+ K+
Sbjct: 321 AAMRGRKLTEQIVIGTPGITRDYLQKY 347
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 101 bits (241), Expect = 8e-22
Identities = 50/141 (35%), Positives = 83/141 (58%)
Frame = +2
Query: 299 IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 478
+++QR+DP SPLYS+ +F L LKP +LK + M F P++IQETALP LL +PP N+IA
Sbjct: 219 VDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA 278
Query: 479 QSQSGTGKTAPLF*RC*AELTLTRIILKYCVLVPHMN*PYKLVKLLQKWQNFVLK*S*SM 658
Q+QSGTGKTA + + + + L P + ++ ++++K F+
Sbjct: 279 QAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHY 338
Query: 659 PLEGKNFPGVQKSQITFLLVL 721
++G N ++ ++T +V+
Sbjct: 339 AIKGGNMAAMRGRKLTEQIVI 359
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +FVL ML R+D N PQ +CL+PT ELA Q GEV KM KF +K+ YA++G +
Sbjct: 286 KTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNM 345
Query: 679 P--RGSKITDHILIGTPGKMFDWGVKF 753
RG K+T+ I+IGTPG D+ K+
Sbjct: 346 AAMRGRKLTEQIVIGTPGITRDYLQKY 372
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical protein
T07D4.4a protein.
Length = 1022
Score = 101 bits (241), Expect = 8e-22
Identities = 50/141 (35%), Positives = 83/141 (58%)
Frame = +2
Query: 299 IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 478
+++QR+DP SPLYS+ +F L LKP +LK + M F P++IQETALP LL +PP N+IA
Sbjct: 603 VDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA 662
Query: 479 QSQSGTGKTAPLF*RC*AELTLTRIILKYCVLVPHMN*PYKLVKLLQKWQNFVLK*S*SM 658
Q+QSGTGKTA + + + + L P + ++ ++++K F+
Sbjct: 663 QAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHY 722
Query: 659 PLEGKNFPGVQKSQITFLLVL 721
++G N ++ ++T +V+
Sbjct: 723 AIKGGNMAAMRGRKLTEQIVI 743
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +FVL ML R+D N PQ +CL+PT ELA Q GEV KM KF +K+ YA++G +
Sbjct: 670 KTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNM 729
Query: 679 P--RGSKITDHILIGTPGKMFDWGVKF 753
RG K+T+ I+IGTPG D+ K+
Sbjct: 730 AAMRGRKLTEQIVIGTPGITRDYLQKY 756
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/56 (50%), Positives = 42/56 (75%)
Frame = +2
Query: 341 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
+ TF+ + L+ +LL+G+YA GF PS IQ+ A+P +L +++IAQ+QSGTGKTA
Sbjct: 25 IPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAIL--KARDVIAQAQSGTGKTA 78
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F +++L +D+ Q L LSPT ELA+Q +V + + ++ + G L
Sbjct: 76 KTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYM-NVQCHACIGGTNL 134
Query: 679 PRGSKITD---HILIGTPGKMFD 738
+ D H++ GTPG++FD
Sbjct: 135 GEDIRKLDYGQHVVSGTPGRVFD 157
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/56 (50%), Positives = 42/56 (75%)
Frame = +2
Query: 341 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
+ TF+ + L+ +LL+G+YA GF PS IQ+ A+P +L +++IAQ+QSGTGKTA
Sbjct: 25 IPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAIL--KARDVIAQAQSGTGKTA 78
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F +++L +D+ Q L LSPT ELA+Q +V + + ++ + G L
Sbjct: 76 KTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYM-NVQCHACIGGTNL 134
Query: 679 PRGSKITD---HILIGTPGKMFD 738
+ D H++ GTPG++FD
Sbjct: 135 GEDIRKLDYGQHVVSGTPGRVFD 157
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/56 (46%), Positives = 39/56 (69%)
Frame = +2
Query: 341 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
V++F+ + LK LL+G+Y GF PS IQ+ A+ + +++IAQ+QSGTGKTA
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAI--VPCTTGKDVIAQAQSGTGKTA 81
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F +++L R+D + Q L ++PT ELA Q +V + + ++ + + + G +
Sbjct: 79 KTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL-NVNILPCIGGTSV 137
Query: 679 ---PRGSKITDHILIGTPGKMFD 738
R + H+++GTPG++ D
Sbjct: 138 RDDQRKLEAGIHVVVGTPGRVGD 160
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/56 (46%), Positives = 39/56 (69%)
Frame = +2
Query: 341 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
V++F+ + LK LL+G+Y GF PS IQ+ A+ + +++IAQ+QSGTGKTA
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAI--VPCTTGKDVIAQAQSGTGKTA 81
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F +++L R+D + Q L ++PT ELA Q +V + + ++ + + + G +
Sbjct: 79 KTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL-NVNILPCIGGTSV 137
Query: 679 ---PRGSKITDHILIGTPGKMFD 738
R + H+++GTPG++ D
Sbjct: 138 RDDQRKLEAGIHVVVGTPGRVGD 160
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +2
Query: 359 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
+ LK LL+G+Y GF PS IQ++A+ +++ QSQ+G+GKT
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTG--KDVTIQSQAGSGKT 47
>Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical
protein C26D10.2b protein.
Length = 268
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG--- 669
K FV+ L +++ V+C+ T ELA Q + + +K+ P +K+ G
Sbjct: 91 KTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAI 150
Query: 670 -EELPRGSKITDHILIGTPGKM 732
++ R + HI++GTPG+M
Sbjct: 151 KKDEERLANDCPHIVVGTPGRM 172
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
F LKP +L+ + GF PS++Q +P + +++ Q++SG GKTA
Sbjct: 43 FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILG--MDVVCQAKSGMGKTA 93
>Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical
protein C26D10.2a protein.
Length = 425
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG--- 669
K FV+ L +++ V+C+ T ELA Q + + +K+ P +K+ G
Sbjct: 91 KTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAI 150
Query: 670 -EELPRGSKITDHILIGTPGKM 732
++ R + HI++GTPG+M
Sbjct: 151 KKDEERLANDCPHIVVGTPGRM 172
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
F LKP +L+ + GF PS++Q +P + +++ Q++SG GKTA
Sbjct: 43 FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILG--MDVVCQAKSGMGKTA 93
>U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA
helicase protein.
Length = 417
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG--- 669
K FV+ L +++ V+C+ T ELA Q + + +K+ P +K+ G
Sbjct: 90 KTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAI 149
Query: 670 -EELPRGSKITDHILIGTPGKM 732
++ R + HI++GTPG+M
Sbjct: 150 KKDEERLANDCPHIVVGTPGRM 171
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
F LKP +L+ + GF PS++Q +P + +++ Q++SG GKTA
Sbjct: 42 FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILG--MDVVCQAKSGMGKTA 92
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
FE L +LL G++ G+ PS IQE ++ L Q+++A++++GTGKT
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTG--QDILARAKNGTGKT 94
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K ++ + ++ ++ Q + + PT ELA+QT ++ +++K ++K+ G +L
Sbjct: 93 KTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSKHI-QLKVMVTTGGTDL 151
Query: 679 P---RGSKITDHILIGTPGKMFD 738
T H++I TPG++ D
Sbjct: 152 RDDIMRLNGTVHLVIATPGRILD 174
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/57 (29%), Positives = 39/57 (68%)
Frame = +2
Query: 338 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
+++ F P +++ V G++ P+ +Q+ ++PTLLA+ +++++ +Q+G+GKTA
Sbjct: 137 AIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLAN--RDLMSCAQTGSGKTA 191
Score = 37.9 bits (84), Expect = 0.008
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 553 YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS----KITDHILIGT 720
YP L LSPT ELAIQ + A K + + I+ G E R + HILI T
Sbjct: 222 YPCALVLSPTRELAIQIHKEATKFS-YKSNIQTAILYGGRENYRDQVNRLRAGTHILIAT 280
Query: 721 PGKMFD 738
PG++ D
Sbjct: 281 PGRLID 286
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/57 (29%), Positives = 39/57 (68%)
Frame = +2
Query: 338 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
+++ F P +++ V G++ P+ +Q+ ++PTLLA+ +++++ +Q+G+GKTA
Sbjct: 121 AIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLAN--RDLMSCAQTGSGKTA 175
Score = 37.9 bits (84), Expect = 0.008
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 553 YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS----KITDHILIGT 720
YP L LSPT ELAIQ + A K + + I+ G E R + HILI T
Sbjct: 206 YPCALVLSPTRELAIQIHKEATKFS-YKSNIQTAILYGGRENYRDQVNRLRAGTHILIAT 264
Query: 721 PGKMFD 738
PG++ D
Sbjct: 265 PGRLID 270
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/57 (29%), Positives = 39/57 (68%)
Frame = +2
Query: 338 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
+++ F P +++ V G++ P+ +Q+ ++PTLLA+ +++++ +Q+G+GKTA
Sbjct: 118 AIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLAN--RDLMSCAQTGSGKTA 172
Score = 37.9 bits (84), Expect = 0.008
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 553 YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS----KITDHILIGT 720
YP L LSPT ELAIQ + A K + + I+ G E R + HILI T
Sbjct: 203 YPCALVLSPTRELAIQIHKEATKFS-YKSNIQTAILYGGRENYRDQVNRLRAGTHILIAT 261
Query: 721 PGKMFD 738
PG++ D
Sbjct: 262 PGRLID 267
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +2
Query: 299 IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 478
IE+ + + + S TFE+L + L+ + F+ PS +Q A+P L ++M+
Sbjct: 7 IEVLDRGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLG--RDMLV 64
Query: 479 QSQSGTGKT 505
Q++SGTGKT
Sbjct: 65 QAKSGTGKT 73
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +2
Query: 299 IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 478
IE+ + + + S TFE+L + L+ + F+ PS +Q A+P L ++M+
Sbjct: 7 IEVLDRGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLG--RDMLV 64
Query: 479 QSQSGTGKT 505
Q++SGTGKT
Sbjct: 65 QAKSGTGKT 73
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 MKIIRQGLVESKL---DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQ 427
M+ I +GL+ +K ++++ + + KTF +L + K V G++ + IQ
Sbjct: 309 MQKISEGLMFNKFFDAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQ 368
Query: 428 ETALPTLLADPPQNMIAQSQSGTGKTA 508
+ ALP L +++A +Q+G+GKTA
Sbjct: 369 QYALP--LVHQGYDIMACAQTGSGKTA 393
Score = 27.9 bits (59), Expect = 8.7
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Frame = +1
Query: 499 KNCSFVLAMLSRV--DSNKN-------YPQVLCLSPTYELAIQTGEVAAKMA-KFCPEIK 648
K +F+L +++R+ D+N N YP+ + L+PT ELA Q K A + EIK
Sbjct: 391 KTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIK 450
Query: 649 LKYAVRGEELPRGS-KITDHILIGTPGKM 732
Y +G + I++GT G++
Sbjct: 451 PVYGGLAVGYNKGQIEKGATIIVGTVGRI 479
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 MKIIRQGLVESKL---DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQ 427
M+ I +GL+ +K ++++ + + KTF +L + K V G++ + IQ
Sbjct: 309 MQKISEGLMFNKFFDAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQ 368
Query: 428 ETALPTLLADPPQNMIAQSQSGTGKTA 508
+ ALP L +++A +Q+G+GKTA
Sbjct: 369 QYALP--LVHQGYDIMACAQTGSGKTA 393
Score = 27.9 bits (59), Expect = 8.7
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Frame = +1
Query: 499 KNCSFVLAMLSRV--DSNKN-------YPQVLCLSPTYELAIQTGEVAAKMA-KFCPEIK 648
K +F+L +++R+ D+N N YP+ + L+PT ELA Q K A + EIK
Sbjct: 391 KTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIK 450
Query: 649 LKYAVRGEELPRGS-KITDHILIGTPGKM 732
Y +G + I++GT G++
Sbjct: 451 PVYGGLAVGYNKGQIEKGATIIVGTVGRI 479
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 MKIIRQGLVESKL---DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQ 427
M+ I +GL+ +K ++++ + + KTF +L + K V G++ + IQ
Sbjct: 309 MQKISEGLMFNKFFDAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQ 368
Query: 428 ETALPTLLADPPQNMIAQSQSGTGKTA 508
+ ALP L +++A +Q+G+GKTA
Sbjct: 369 QYALP--LVHQGYDIMACAQTGSGKTA 393
Score = 27.9 bits (59), Expect = 8.7
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Frame = +1
Query: 499 KNCSFVLAMLSRV--DSNKN-------YPQVLCLSPTYELAIQTGEVAAKMA-KFCPEIK 648
K +F+L +++R+ D+N N YP+ + L+PT ELA Q K A + EIK
Sbjct: 391 KTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIK 450
Query: 649 LKYAVRGEELPRGS-KITDHILIGTPGKM 732
Y +G + I++GT G++
Sbjct: 451 PVYGGLAVGYNKGQIEKGATIIVGTVGRI 479
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 37.9 bits (84), Expect = 0.008
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +1
Query: 547 KNYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKYAVRGEELPRGSKIT--DHILIG 717
K YP L LSPT EL++Q + K A P L Y R + K+ HILI
Sbjct: 248 KQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIA 307
Query: 718 TPGKMFD 738
TPG++ D
Sbjct: 308 TPGRLID 314
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 36.7 bits (81), Expect = 0.019
Identities = 24/79 (30%), Positives = 41/79 (51%)
Frame = +2
Query: 269 RQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTL 448
++ L + K+ E KD + K+F L + L +G+ PSKIQ+ ALP
Sbjct: 20 KKNLTKKKVVTEEIEKDDEEDVKE-KSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHA 78
Query: 449 LADPPQNMIAQSQSGTGKT 505
L +++I +++G+GKT
Sbjct: 79 LQG--KDVIGLAETGSGKT 95
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/53 (30%), Positives = 33/53 (62%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
++ + L ++ K + GFN P+ IQ +P ++ ++++A S++G+GKTA
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDG--KDVVAMSRTGSGKTA 76
Score = 35.9 bits (79), Expect = 0.033
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYP-QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEE 675
K +FV+ ML ++ + L +SPT ELA+QT +V ++ +F ++ V G++
Sbjct: 74 KTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRF-TGLRCACLVGGDQ 132
Query: 676 L-PRGSKITDH--ILIGTPGKM 732
+ + S I ++ IL+ TPG++
Sbjct: 133 IEEQFSTIHENPDILLATPGRL 154
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/53 (30%), Positives = 33/53 (62%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
++ + L ++ K + GFN P+ IQ +P ++ ++++A S++G+GKTA
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDG--KDVVAMSRTGSGKTA 76
Score = 35.9 bits (79), Expect = 0.033
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYP-QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEE 675
K +FV+ ML ++ + L +SPT ELA+QT +V ++ +F ++ V G++
Sbjct: 74 KTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRF-TGLRCACLVGGDQ 132
Query: 676 L-PRGSKITDH--ILIGTPGKM 732
+ + S I ++ IL+ TPG++
Sbjct: 133 IEEQFSTIHENPDILLATPGRL 154
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 35.5 bits (78), Expect = 0.043
Identities = 22/79 (27%), Positives = 45/79 (56%)
Frame = +2
Query: 269 RQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTL 448
RQ L+ES + ++ D P + KTF L +LK + +G+ +++QE+ +
Sbjct: 67 RQKLMESLVGPQVDEMD-FEPEH--KTFADFGLDERILKSIGELGWEKANQVQESVISLA 123
Query: 449 LADPPQNMIAQSQSGTGKT 505
L + +N++ ++++G+GKT
Sbjct: 124 LEN--KNIMGRARTGSGKT 140
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 35.1 bits (77), Expect = 0.057
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +2
Query: 284 ESKLDIEIQRKDPNSPLYSVKTFEALHLK--PNLLKGVYAMGFNAPSKIQETALPTLLAD 457
E K E + S + TF +L K NLLK V +GF ++IQ ++ LL
Sbjct: 46 EQKHQTEESSETKVSEFLTKTTFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEG 105
Query: 458 PPQNMIAQSQSGTGKT 505
++++A +++G+GKT
Sbjct: 106 --KDVLASAKTGSGKT 119
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F + +L ++ + L L+PT ELA Q E + K +K V G L
Sbjct: 139 KTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPI-TLKCSVIVGGRSL 197
Query: 679 ---PRGSKITDHILIGTPGKMFD 738
R H+++ TPG++ D
Sbjct: 198 IHQARELSERPHVVVATPGRLAD 220
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F + +L ++ + L L+PT ELA Q E + K +K V G L
Sbjct: 139 KTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPI-TLKCSVIVGGRSL 197
Query: 679 ---PRGSKITDHILIGTPGKMFD 738
R H+++ TPG++ D
Sbjct: 198 IHQARELSERPHVVVATPGRLAD 220
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGT 720
P + L+PT ELA+QT + A K AK + LK A + +I D I++ T
Sbjct: 378 PIAVILAPTRELAMQTYKEANKFAK---PLGLKVACTYGGVGISEQIADLKRGAEIVVCT 434
Query: 721 PGKMFD 738
PG+M D
Sbjct: 435 PGRMID 440
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 231 GYQVHHQNLFLDYVF 187
GY+ HH NLF+ Y F
Sbjct: 650 GYETHHANLFIKYTF 664
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 275 GLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPN 376
G VES D+E R+D L S ++ +H P+
Sbjct: 1920 GNVESAYDVETDRRDSERSLKSERSIPEIHTSPS 1953
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 275 GLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPN 376
G VES D+E R+D L S ++ +H P+
Sbjct: 1920 GNVESAYDVETDRRDSERSLKSERSIPEIHTSPS 1953
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,019,331
Number of Sequences: 27780
Number of extensions: 381238
Number of successful extensions: 972
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -