Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1252
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       40   3e-05
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.35 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.35 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   7.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 21/71 (29%), Positives = 43/71 (60%)
 Frame = +2

Query: 296 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 475
           +I++     N P   +++FEA  L+  +L  +   G+  P+ +Q+ ALP ++    ++++
Sbjct: 181 NIQVNVSGDNVP-QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNG--RDLM 237

Query: 476 AQSQSGTGKTA 508
           A +Q+G+GKTA
Sbjct: 238 ACAQTGSGKTA 248



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL--PRGSKITD-HILIGTPG 726
           PQV+ +SPT EL IQ  +   K +     +K   A  G  +   RG      HIL+ TPG
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFS-LNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPG 332

Query: 727 KMFDW 741
           ++ D+
Sbjct: 333 RLLDF 337


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 88  NKDSSKS*IWLASGDKRQKSWRFQIKLQGWAWIKNIIKKQILMMYL 225
           N+D + S   L S DK+Q +WR    L GW+    I    I+M+ +
Sbjct: 373 NEDDNTS---LVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLII 415


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 302 EIQRKDPNSPLYSVKTFEALHLKPNLL 382
           EI R   NSPL  ++  + LHL+ N +
Sbjct: 223 EITRLQENSPLLDLRQLQELHLQRNAI 249


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 783 KTLILPIQHAKLDTPIKHLS 724
           KT + PI+  KL   ++H+S
Sbjct: 25  KTTVAPIERVKLLLQVQHIS 44


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 783 KTLILPIQHAKLDTPIKHLS 724
           KT + PI+  KL   ++H+S
Sbjct: 25  KTTVAPIERVKLLLQVQHIS 44


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 770 YPYNMPNLTPQSNIFPGVPI 711
           Y  N+P  T +   FPGV I
Sbjct: 431 YKENLPKYTTEELNFPGVSI 450


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 770 YPYNMPNLTPQSNIFPGVPI 711
           Y  N+P  T +   FPGV I
Sbjct: 431 YKENLPKYTTEELNFPGVSI 450


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 770 YPYNMPNLTPQSNIFPGVPI 711
           Y  N+P  T +   FPGV I
Sbjct: 57  YKENLPKYTTEELNFPGVSI 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,200
Number of Sequences: 438
Number of extensions: 4907
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)