Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1252
(787 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 69 5e-12
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 54 1e-07
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 53 2e-07
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 52 4e-07
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 51 1e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 50 1e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 50 1e-06
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 50 2e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 49 4e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 49 4e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 49 4e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 48 7e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 44 9e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 44 9e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 42 5e-04
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 41 0.001
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 41 0.001
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 41 0.001
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.002
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 39 0.003
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 39 0.003
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 39 0.003
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 38 0.008
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 38 0.008
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 38 0.008
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 37 0.013
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 37 0.017
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 37 0.017
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 36 0.023
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 36 0.030
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 35 0.070
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 35 0.070
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 35 0.070
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 34 0.12
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 34 0.12
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 33 0.21
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 33 0.21
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 33 0.28
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 32 0.38
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 32 0.50
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 32 0.50
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 31 0.66
At3g60040.1 68416.m06705 F-box family protein contains a novel d... 31 0.87
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 31 0.87
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 31 0.87
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 30 1.5
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 30 1.5
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 29 3.5
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 29 4.6
At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserin... 29 4.6
At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserin... 29 4.6
At3g59730.1 68416.m06664 receptor lectin kinase, putative simila... 28 6.1
At1g50450.1 68414.m05655 expressed protein 28 8.1
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 68.5 bits (160), Expect = 5e-12
Identities = 38/85 (44%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF---CPEIKLKYAVRG 669
K FVL MLSRVD PQ LC+ PT ELA Q EV KM KF E+ + + RG
Sbjct: 144 KTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRG 203
Query: 670 -EELPRGSKITDHILIGTPGKMFDW 741
RG+ ++ H++IGTPG + W
Sbjct: 204 APAATRGAPVSAHVVIGTPGTLKKW 228
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +2
Query: 323 NSPLYSVKTFEALHLKPNLLKGVYA-MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTG 499
++P S FE L+L P L+KG+Y M F PSKIQ +LP ++ P +++IAQ+ +G+G
Sbjct: 84 DTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSG 143
Query: 500 KT 505
KT
Sbjct: 144 KT 145
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/91 (32%), Positives = 52/91 (57%)
Frame = +2
Query: 347 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAPLF*RC 526
+F+A+ L+P+LL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKG--LDVIQQAQSGTGKTATFCSGV 99
Query: 527 *AELTLTRIILKYCVLVPHMN*PYKLVKLLQ 619
+L ++ + + VL P ++ K+++
Sbjct: 100 LQQLDISLVQCQALVLAPTRELAQQIEKVMR 130
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F +L ++D + Q L L+PT ELA Q +V + + +K + V G +
Sbjct: 91 KTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLG-VKAQACVGGTSV 149
Query: 679 PRGSKITD---HILIGTPGKMFD 738
++ H+++GTPG++FD
Sbjct: 150 REDQRVLQSGVHVVVGTPGRVFD 172
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/76 (36%), Positives = 47/76 (61%)
Frame = +2
Query: 281 VESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADP 460
+E LD E + + +K+F+ + + +L+GVY G+ PS+IQ+ AL +L
Sbjct: 1 MEGTLDEENLVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKG- 59
Query: 461 PQNMIAQSQSGTGKTA 508
+++IAQ+QSGTGKT+
Sbjct: 60 -RDVIAQAQSGTGKTS 74
Score = 32.7 bits (71), Expect = 0.28
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +++ V+ + QVL LSP+ ELA QT + + I+ + G+ +
Sbjct: 72 KTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAH-TNIQAHACIGGKSI 130
Query: 679 PRGSKITD---HILIGTPGKMFDWGVKFGML 762
K + H + GTPG+++D +K G L
Sbjct: 131 GEDIKKLERGVHAVSGTPGRVYDM-IKRGSL 160
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/92 (33%), Positives = 51/92 (55%)
Frame = +2
Query: 344 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAPLF*R 523
++F+A+ L+ NLL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSG 96
Query: 524 C*AELTLTRIILKYCVLVPHMN*PYKLVKLLQ 619
+L + I + VL P ++ K+++
Sbjct: 97 VLQQLDFSLIQCQALVLAPTRELAQQIEKVMR 128
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F +L ++D + Q L L+PT ELA Q +V + + +K+ V G +
Sbjct: 89 KTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLG-VKVHACVGGTSV 147
Query: 679 PRGSKITD---HILIGTPGKMFD 738
+I H+++GTPG++FD
Sbjct: 148 REDQRILQAGVHVVVGTPGRVFD 170
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +2
Query: 344 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
++F+A+ L+ NLL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTA 91
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F +L ++D Q L L+PT ELA Q +V + + +K+ V G +
Sbjct: 89 KTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSV 147
Query: 679 PRGSKITD---HILIGTPGKMFD 738
+I H+++GTPG++FD
Sbjct: 148 REDQRILQAGVHVVVGTPGRVFD 170
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/77 (35%), Positives = 44/77 (57%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAPLF*RC* 529
FE LK +LLKG+Y GF PS IQE ++P L +++A++++GTGKT
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPVL 183
Query: 530 AELTLTRIILKYCVLVP 580
++ +++ +LVP
Sbjct: 184 EKIDPNNNVIQAMILVP 200
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F + +L ++D N N Q + L PT ELA+QT +V +++K+ I++ G L
Sbjct: 174 KTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYL-NIQVMVTTGGTSL 232
Query: 679 PRGSKITD---HILIGTPGKMFD 738
H+L+GTPG++ D
Sbjct: 233 RDDIMRLHQPVHLLVGTPGRILD 255
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/77 (35%), Positives = 44/77 (57%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAPLF*RC* 529
FE LK +LLKG+Y GF PS IQE ++P L +++A++++GTGKT
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPVL 183
Query: 530 AELTLTRIILKYCVLVP 580
++ +++ +LVP
Sbjct: 184 EKIDPNNNVIQAMILVP 200
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F + +L ++D N N Q + L PT ELA+QT +V +++K+ I++ G L
Sbjct: 174 KTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYL-NIQVMVTTGGTSL 232
Query: 679 PRGSKITD---HILIGTPGKMFD 738
H+L+GTPG++ D
Sbjct: 233 RDDIMRLHQPVHLLVGTPGRILD 255
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/56 (42%), Positives = 39/56 (69%)
Frame = +2
Query: 341 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
+ +F + +K ++L+GVY GF PS IQ+ A+ +L +++IAQ+QSGTGKT+
Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQG--RDVIAQAQSGTGKTS 87
Score = 34.3 bits (75), Expect = 0.093
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K L++ VD++ Q L LSPT ELA QT E + I+ + G +
Sbjct: 85 KTSMIALSVCQVVDTSSREVQALILSPTRELATQT-EKTIQAIGLHANIQAHACIGGNSV 143
Query: 679 PRGSKITD---HILIGTPGKMFD 738
+ + H++ GTPG++ D
Sbjct: 144 GEDIRKLEHGVHVVSGTPGRVCD 166
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
FE LK LL G+Y GF PS IQE ++P L ++++A++++GTGKTA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTA 183
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F + +L ++D + N Q + + PT ELA+QT +V ++ K +I++ G L
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSL 239
Query: 679 PRG-SKITD--HILIGTPGKMFD 738
++ H+L+GTPG++ D
Sbjct: 240 KDDIMRLYQPVHLLVGTPGRILD 262
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
FE LK LL G+Y GF PS IQE ++P L ++++A++++GTGKTA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTA 183
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F + +L ++D + N Q + + PT ELA+QT +V ++ K +I++ G L
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSL 239
Query: 679 PRG-SKITD--HILIGTPGKMFD 738
++ H+L+GTPG++ D
Sbjct: 240 KDDIMRLYQPVHLLVGTPGRILD 262
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/77 (33%), Positives = 44/77 (57%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAPLF*RC* 529
FE LK +LL+G+Y GF PS IQE ++P L +++A++++GTGKT
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPTL 213
Query: 530 AELTLTRIILKYCVLVP 580
++ +++ +LVP
Sbjct: 214 EKIDPENNVIQAVILVP 230
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F + L ++D N Q + L PT ELA+QT +V +++K+ +I++ G L
Sbjct: 204 KTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYL-KIEVMVTTGGTSL 262
Query: 679 PRG-SKITD--HILIGTPGKMFDWGVK 750
++ H+L+GTPG++ D K
Sbjct: 263 RDDIMRLYQPVHLLVGTPGRILDLAKK 289
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +2
Query: 326 SPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
SPL+S K+FE L L +LL + GF+ P+ +Q A+P ++ + + QS +G+GKT
Sbjct: 104 SPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG--HDAVIQSYTGSGKT 161
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 44.4 bits (100), Expect = 9e-05
Identities = 23/70 (32%), Positives = 42/70 (60%)
Frame = +2
Query: 296 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 475
D E ++K + + + KTFE+L L N K + MGF ++IQ A+P L+ ++++
Sbjct: 138 DKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMG--EDVL 195
Query: 476 AQSQSGTGKT 505
+++G+GKT
Sbjct: 196 GAARTGSGKT 205
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +2
Query: 302 EIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQ 481
E+ RK+ FE+L+L PN+ + G+ P+ IQ +P +L+ +++A
Sbjct: 14 ELHRKEKQKKKGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG--VDVVAM 71
Query: 482 SQSGTGKTA 508
+++G+GKTA
Sbjct: 72 ARTGSGKTA 80
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +2
Query: 341 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
VKTF L ++ L+K +G+ PSKIQ ALP L +++I +Q+G+GKT
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEG--KDVIGLAQTGSGKT 60
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +1
Query: 571 LSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT-----DHILIGTPGKMF 735
LSPT ELAIQ +A + +I L+ AV + R + H+++ TPG+++
Sbjct: 95 LSPTRELAIQ---IAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLW 151
Query: 736 D 738
D
Sbjct: 152 D 152
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTA 98
Score = 34.7 bits (76), Expect = 0.070
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K FVL+ L +++ + L L T ELA Q + + + P+ K+ G +
Sbjct: 96 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
Query: 679 PRGSKI----TDHILIGTPGKM 732
+ HI++GTPG++
Sbjct: 156 KIHKDLLKNECPHIVVGTPGRV 177
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTA 98
Score = 34.7 bits (76), Expect = 0.070
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K FVL+ L +++ + L L T ELA Q + + + P+ K+ G +
Sbjct: 96 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
Query: 679 PRGSKI----TDHILIGTPGKM 732
+ HI++GTPG++
Sbjct: 156 KIHKDLLKNECPHIVVGTPGRV 177
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 326 SPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 502
S Y KT F+ L P LKG+ GF + +QE LP +L ++++A++++GTGK
Sbjct: 73 SDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQG--KDILAKAKTGTGK 130
Query: 503 T 505
T
Sbjct: 131 T 131
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 562 VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP----RGSKITDHILIGTPGK 729
VL + PT ELA Q A + K+ P I ++ + G +LP R K IL+ TPG+
Sbjct: 159 VLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGR 218
Query: 730 MFD 738
+ D
Sbjct: 219 LKD 221
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/68 (30%), Positives = 43/68 (63%)
Frame = +2
Query: 302 EIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQ 481
E ++K+ +P K+FE L L L++ + G P+ IQ++A+P +L ++++A+
Sbjct: 36 EEEQKEEEAP----KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG--KDVVAR 89
Query: 482 SQSGTGKT 505
+++G+GKT
Sbjct: 90 AKTGSGKT 97
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +2
Query: 347 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKT 209
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGT 720
P +L LSPT ELA Q E A K + I G P+G ++ D I++ T
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYGG--APKGPQLRDLERGADIVVAT 287
Query: 721 PGKMFD 738
PG++ D
Sbjct: 288 PGRLND 293
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +2
Query: 347 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKT 209
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGT 720
P +L LSPT ELA Q E A K + I G P+G ++ D I++ T
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYGG--APKGPQLRDLERGADIVVAT 287
Query: 721 PGKMFD 738
PG++ D
Sbjct: 288 PGRLND 293
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +2
Query: 347 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKT 209
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGT 720
P +L LSPT ELA Q E A K + I G P+G ++ D I++ T
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYGG--APKGPQLRDLERGADIVVAT 287
Query: 721 PGKMFD 738
PG++ D
Sbjct: 288 PGRLND 293
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/76 (26%), Positives = 41/76 (53%)
Frame = +2
Query: 278 LVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLAD 457
+ ++ DI ++ +D P+ K F+ + N+L+ + +GF P+ IQ P L
Sbjct: 146 MYRTERDISVEGRDVPKPM---KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG 202
Query: 458 PPQNMIAQSQSGTGKT 505
+++I +++G+GKT
Sbjct: 203 --RDLIGIAETGSGKT 216
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGT 720
P VL L+PT ELA+Q E + KF ++ P+G +I D I+I T
Sbjct: 239 PIVLILAPTRELAVQIQE---ESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIAT 295
Query: 721 PGKMFD 738
PG++ D
Sbjct: 296 PGRLID 301
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/76 (26%), Positives = 41/76 (53%)
Frame = +2
Query: 278 LVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLAD 457
+ ++ DI ++ +D P+ K F+ + N+L+ + +GF P+ IQ P L
Sbjct: 146 MYRTERDISVEGRDVPKPM---KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG 202
Query: 458 PPQNMIAQSQSGTGKT 505
+++I +++G+GKT
Sbjct: 203 --RDLIGIAETGSGKT 216
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGT 720
P VL L+PT ELA+Q E + KF ++ P+G +I D I+I T
Sbjct: 239 PIVLILAPTRELAVQIQE---ESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIAT 295
Query: 721 PGKMFD 738
PG++ D
Sbjct: 296 PGRLID 301
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 326 SPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 502
S Y KT F+ L P LK + GF + +QE LP +L ++++A++++GTGK
Sbjct: 375 SDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQG--KDVLAKAKTGTGK 432
Query: 503 T 505
T
Sbjct: 433 T 433
Score = 35.9 bits (79), Expect = 0.030
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 562 VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD----HILIGTPGK 729
VL + PT ELA Q A + K+ P I ++ + G +LP + IL+ TPG+
Sbjct: 461 VLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGR 520
Query: 730 MFD 738
+ D
Sbjct: 521 LKD 523
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 37.1 bits (82), Expect = 0.013
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 MKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYA-MGFNAPSKIQET 433
MK +Q E+K + + K S L++ +F +L L L + MGF AP+ +Q
Sbjct: 1 MKRAQQSARETKQEAKDASK-AKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQ 59
Query: 434 ALPTLLADPPQNMIAQSQSGTGKT 505
A+P +L+ ++++ + +GTGKT
Sbjct: 60 AIPVILSG--RDVLVNAPTGTGKT 81
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +2
Query: 296 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 475
D I K P ++++E L LLK V G+ PS IQ A+P L +++I
Sbjct: 298 DFNISYKGSRIPR-PMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIP--LGLQQRDVI 354
Query: 476 AQSQSGTGKTA 508
+++G+GKTA
Sbjct: 355 GIAETGSGKTA 365
Score = 35.5 bits (78), Expect = 0.040
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Frame = +1
Query: 499 KNCSFVLAMLSRVD-----SNKNY---PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLK 654
K +FVL ML+ + S +N P + ++PT ELA Q E K A + ++
Sbjct: 363 KTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYL-GFRVT 421
Query: 655 YAVRGEEL-PRGSKITD--HILIGTPGKMFD 738
V G+ + +G KIT I+I TPG++ D
Sbjct: 422 SIVGGQSIEEQGLKITQGCEIVIATPGRLID 452
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 36.7 bits (81), Expect = 0.017
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYP----QVL--CLSPTYELAIQTGEVAAKMAKFCPEIKLKYA 660
K +F+L + + + +YP QV+ +SPT EL+ Q +VA P +
Sbjct: 66 KTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLL 125
Query: 661 VRGEELPRGSKITD----HILIGTPGKMFD 738
V G E+ + ++LIGTPG++ D
Sbjct: 126 VGGREVEADMNTLEEEGANLLIGTPGRLSD 155
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 36.3 bits (80), Expect = 0.023
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGT 720
P VL L+PT ELA+Q + + +KF K+K +P+G ++ D I+I T
Sbjct: 173 PIVLVLAPTRELAVQ---IQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIAT 229
Query: 721 PGKMFD 738
PG++ D
Sbjct: 230 PGRLID 235
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +2
Query: 296 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 475
+I ++ KD P VK+F + +L+ V GF P+ IQ P +A +++I
Sbjct: 86 EITVEGKDIPKP---VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWP--MAMKGRDLI 140
Query: 476 AQSQSGTGKT 505
+++G+GKT
Sbjct: 141 GIAETGSGKT 150
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 290 KLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQN 469
+L I + D + P VKTFE ++ + + P+ IQ ALP +L+ ++
Sbjct: 213 RLGIRVSGFDVHRP---VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSG--RD 267
Query: 470 MIAQSQSGTGKTA 508
+I +++G+GKTA
Sbjct: 268 VIGIAKTGSGKTA 280
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 34.7 bits (76), Expect = 0.070
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K FVL+ L +++ + L L T ELA Q + + + P+ K+ G +
Sbjct: 13 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 72
Query: 679 PRGSKI----TDHILIGTPGKM 732
+ HI++GTPG++
Sbjct: 73 KIHKDLLKNECPHIVVGTPGRV 94
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 34.7 bits (76), Expect = 0.070
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYP----QVL--CLSPTYELAIQTGEVAAKMAKFCPEIKLKYA 660
K +FV+ ++ + + ++P QV+ +SPT EL+ Q VA +
Sbjct: 66 KTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLL 125
Query: 661 VRGEELPRGSKITD----HILIGTPGKMFD 738
V G E+ KI + ++LIGTPG++ D
Sbjct: 126 VGGREVKADMKIIEEEGCNVLIGTPGRLSD 155
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 34.7 bits (76), Expect = 0.070
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 541 SNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD--HILI 714
S K P L LSPT ELA+Q +V + + C + + P+ S I I+I
Sbjct: 187 SKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVI 246
Query: 715 GTPGKMFD 738
GTPG++ D
Sbjct: 247 GTPGRLRD 254
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = +2
Query: 296 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 475
DI ++ + P V TF + L L + + P+ +Q A+P LLA+ ++++
Sbjct: 136 DIPVETSGGDVPP-PVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE--RDLM 192
Query: 476 AQSQSGTGKTA 508
A +Q+G+GKTA
Sbjct: 193 ACAQTGSGKTA 203
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 553 YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH---ILIGTP 723
YP + LSPT ELA Q + A K + + +K+ A G + + + + IL+ TP
Sbjct: 229 YPFAVILSPTRELACQIHDEAKKFS-YQTGVKVVVAYGGTPIHQQLRELERGCDILVATP 287
Query: 724 GKMFD 738
G++ D
Sbjct: 288 GRLND 292
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = +2
Query: 296 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 475
DI ++ + P V TF + L L + + P+ +Q A+P LLA+ ++++
Sbjct: 136 DIPVETSGGDVPP-PVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE--RDLM 192
Query: 476 AQSQSGTGKTA 508
A +Q+G+GKTA
Sbjct: 193 ACAQTGSGKTA 203
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 553 YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH---ILIGTP 723
YP + LSPT ELA Q + A K + + +K+ A G + + + + IL+ TP
Sbjct: 229 YPFAVILSPTRELACQIHDEAKKFS-YQTGVKVVVAYGGTPIHQQLRELERGCDILVATP 287
Query: 724 GKMFD 738
G++ D
Sbjct: 288 GRLND 292
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 559 QVLCLSPTYELAIQTGEVAAKMAKF----CPEIKLKYAVRGEELPRGSKITDHILIGTPG 726
+VL L+PT ELA+Q + +A+F C I +VR +E+ S I++ TPG
Sbjct: 240 RVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS--MPDIVVATPG 297
Query: 727 KMFD 738
+M D
Sbjct: 298 RMID 301
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 33.1 bits (72), Expect = 0.21
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 508 SFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCP-EIKLKY--AVRGEEL 678
+F+L R DS +N P VL L+PT ELA Q + A + + Y A +G +L
Sbjct: 493 AFILLRHCRNDS-RNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQL 551
Query: 679 PRGSKITDHILIGTPGKMFD 738
+ D I++ TPG++ D
Sbjct: 552 KELERGAD-IVVATPGRLND 570
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +2
Query: 389 VYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
VY+ GF+APS IQ + P +A ++++A +++G+GKT
Sbjct: 244 VYSAGFSAPSPIQAQSWP--IAMQNRDIVAIAKTGSGKT 280
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +1
Query: 526 LSRVDSNKNY-PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD 702
L R+ ++ P +L LSPT ELA Q + + KF K+ A P+G ++ +
Sbjct: 291 LQRIHNDSRMGPTILVLSPTRELATQ---IQVEALKFGKSSKISCACLYGGAPKGPQLKE 347
Query: 703 -----HILIGTPGKMFD 738
I++ TPG++ D
Sbjct: 348 IERGVDIVVATPGRLND 364
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/78 (26%), Positives = 39/78 (50%)
Frame = +2
Query: 272 QGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLL 451
Q + E+ +IE + +++ + ++L + +GF P+ IQ ALPTL
Sbjct: 52 QAVAETSSEIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLF 111
Query: 452 ADPPQNMIAQSQSGTGKT 505
++ I +Q+G+GKT
Sbjct: 112 TG--RDCILHAQTGSGKT 127
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 541 SNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT--DHILI 714
S +N V+ + PT ELAIQT VA ++ K + +I +++I
Sbjct: 157 SPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVI 216
Query: 715 GTPGKMFD 738
TPG++ D
Sbjct: 217 ATPGRLLD 224
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +2
Query: 347 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
TF++L L + MGF ++IQ ++ LL ++++ +++G+GKT
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEG--KDVLGAARTGSGKT 140
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 269 RQGLVESKLDIEIQRKDPNSPLYSVKTFEALH-LKPNLLKGVYAMGFNAPSKIQETALPT 445
R L + I + + PL S + + + +L+ + +GF P+ IQ A+P
Sbjct: 115 RDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPI 174
Query: 446 LLADPPQNMIAQSQSGTGKT 505
LL+ + A + +G+GKT
Sbjct: 175 LLSG--RECFACAPTGSGKT 192
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 31.5 bits (68), Expect = 0.66
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQT----GEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDHILIGTP 723
P+ L L+PT ELA Q E A ++ C + Y ++ L RG +++GTP
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGV----DVVVGTP 236
Query: 724 GKMFD 738
G++ D
Sbjct: 237 GRIID 241
>At3g60040.1 68416.m06705 F-box family protein contains a novel
domain with similarity to F-box domain;
Length = 838
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +2
Query: 272 QGLVESKLDIEIQRK----DPNSPLYSVKTFEALHLKPNLLKGVYA 397
+ LVE+KLD+ ++RK D + ++ ++LHL P+ + +Y+
Sbjct: 494 ESLVEAKLDLGLERKVLRMDVTDLIIGIRNVQSLHLSPDSVHVIYS 539
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 553 YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH---ILIGTP 723
YP + LSPT ELA Q + A K + + +K+ A G + + + + IL+ TP
Sbjct: 224 YPLAVILSPTRELACQIHDEARKFS-YQTGVKVVVAYGGTPVNQQIRELERGVDILVATP 282
Query: 724 GKMFD 738
G++ D
Sbjct: 283 GRLND 287
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 553 YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDH---ILIGTP 723
YP + LSPT ELA Q + A K + + +K+ A G + + + + IL+ TP
Sbjct: 237 YPLAVILSPTRELASQIHDEAKKFS-YQTGVKVVVAYGGTPINQQLRELERGVDILVATP 295
Query: 724 GKMFD 738
G++ D
Sbjct: 296 GRLND 300
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 553 YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG---EELPRGSKITDHILIGTP 723
Y + L ++PT ELA+Q E AK +K+ V G E+ R K I++ TP
Sbjct: 279 YLRALIITPTRELALQVTEHLENAAKNL-SVKVVPIVGGMFSEKQERRLKEKPEIVVATP 337
Query: 724 GKMFD 738
G++++
Sbjct: 338 GRLWE 342
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG-EE 675
K +F L +L R+ + L ++PT ELA Q E K C ++ V G +
Sbjct: 108 KTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAE-QFKALGSCLNLRCSVIVGGMDM 166
Query: 676 LPRGSKITD--HILIGTPGKM 732
L + + HI+I TPG++
Sbjct: 167 LTQTMSLVSRPHIVITTPGRI 187
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYP----QVL--CLSPTYELAIQTGEVA-AKMAKF--CPEIKL 651
K +F+L + + + +YP QV+ +SPT EL+ Q +VA A F C E++
Sbjct: 67 KTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEA 126
Query: 652 KYAVRGEELPRGSKITDHILIGTPGKMFD 738
EE G+ ++LIGTPG++ D
Sbjct: 127 DMNTLEEE---GA----NLLIGTPGRLSD 148
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQ----VLCLSPTYELAIQTGEVAAKMAKF 633
K +FV+ +L ++ + P+ + +SPT ELA QT V K+ KF
Sbjct: 121 KTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKF 169
>At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserine
dehydrogenase, putative / AK-HSDH, putative similar to
gb|X71364 [PIR|S46497] aspartate kinase / homoserine
dehydrogenase from Arabidopsis thaliana
Length = 916
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 257 MKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETA 436
++ I QG E + + I+R+D SVK A+H + L + AMG P I T
Sbjct: 519 VRAISQGCSEYNVTVVIKRED------SVKALRAVHSRFFLSRTTLAMGIVGPGLIGATL 572
Query: 437 LPTL 448
L L
Sbjct: 573 LDQL 576
>At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserine
dehydrogenase, putative / AK-HSDH, putative similar to
gb|X71364 [PIR|S46497] aspartate kinase / homoserine
dehydrogenase from Arabidopsis thaliana
Length = 859
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 257 MKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETA 436
++ I QG E + + I+R+D SVK A+H + L + AMG P I T
Sbjct: 519 VRAISQGCSEYNVTVVIKRED------SVKALRAVHSRFFLSRTTLAMGIVGPGLIGATL 572
Query: 437 LPTL 448
L L
Sbjct: 573 LDQL 576
>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains pfam domains PF00139:
Legume lectins beta domain and PF00069: Protein kinase
domain
Length = 523
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 231 GYQVHHQNLFLDYVFYPSPALQLYL 157
GY H +NL+L Y F P+ +L YL
Sbjct: 397 GYCKHKENLYLVYDFMPNGSLDKYL 421
>At1g50450.1 68414.m05655 expressed protein
Length = 428
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 538 DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEE 675
D ++NY +VL L T + G A ++K CPE+K+ R E
Sbjct: 34 DPSRNY-RVLVLGGTGRVG---GSTATALSKLCPELKIVVGGRNRE 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,825,653
Number of Sequences: 28952
Number of extensions: 349359
Number of successful extensions: 949
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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