Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1250
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    24   1.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.1  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   6.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   6.3  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   8.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   8.3  

>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 423 GAELVDAVLDVVRKECENCDCLQ 491
           G ++  A+ +++ K CE CD  Q
Sbjct: 49  GNQIKGALPEIIGKNCERCDSRQ 71


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 369 VFGQSGAGNNW-AKGHYTEGAELVDAVLDVVRKECENCDCLQG 494
           +  + G  N + A+  Y  G+E   +++ +   +C  C C  G
Sbjct: 839 ILAEGGCPNLYDARKPYVNGSEYHPSIVSLGEYKCVTCKCENG 881


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 405 KGHYT-EGAELVDAVLDVVRKECENC 479
           KG  T +GAEL   + D +  EC  C
Sbjct: 53  KGKCTPDGAELKRHLPDALHTECSKC 78


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 601 SSPLAQSIRHRRRTIQRSSLHPS 669
           SSP  + I    R+ + +SLHPS
Sbjct: 154 SSPFDKLIEEDSRSNEDTSLHPS 176


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 601 SSPLAQSIRHRRRTIQRSSLHPS 669
           SSP  + I    R+ + +SLHPS
Sbjct: 102 SSPFDKLIEEDSRSNEDTSLHPS 124


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 601 SSPLAQSIRHRRRTIQRSSLHPS 669
           SSP  + I    R+ + +SLHPS
Sbjct: 285 SSPFDKLIEEDSRSNEDTSLHPS 307


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 580 QNHEHILSSPLAQSIRHRRRTIQRSSLHPSTSREYRRN 693
           ++HE  +  P   S   R RT   SS      RE+ R+
Sbjct: 70  RSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRS 107


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 580 QNHEHILSSPLAQSIRHRRRTIQRSSLHPSTSREYRRN 693
           ++HE  +  P   S   R RT   SS      RE+ R+
Sbjct: 90  RSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRS 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,724
Number of Sequences: 336
Number of extensions: 2819
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)