Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1249
         (752 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CFCAF Cluster: cation channel family protein; n...    33   10.0 
UniRef50_A5K1K3 Cluster: Putative uncharacterized protein; n=1; ...    33   10.0 

>UniRef50_UPI00006CFCAF Cluster: cation channel family protein; n=1;
            Tetrahymena thermophila SB210|Rep: cation channel family
            protein - Tetrahymena thermophila SB210
          Length = 1223

 Score = 32.7 bits (71), Expect = 10.0
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 397  NRVHVRGSHFTDIVFFFYYLTKANVIQCCHKNFGTPPNVIS*TFFVNVIQNKKLETIK-N 221
            N+++ +G  F  I  F +Y T  N+     K +   P  +  + F N+ + KK +TIK N
Sbjct: 1153 NQLNKQGDDFEIIREFNHYFTHNNITNIIKKLYENQPKQLRQSRFSNIQKIKKSKTIKLN 1212

Query: 220  RNRST 206
             N++T
Sbjct: 1213 INKTT 1217


>UniRef50_A5K1K3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 788

 Score = 32.7 bits (71), Expect = 10.0
 Identities = 27/75 (36%), Positives = 35/75 (46%)
 Frame = -2

Query: 364 DIVFFFYYLTKANVIQCCHKNFGTPPNVIS*TFFVNVIQNKKLETIKNRNRSTNLALAGL 185
           DIVFFF YL K   I      F    NV   TF  N  + KK   I  + RS N   +  
Sbjct: 143 DIVFFFLYLHKTKQI------FYKEENVTHNTFHRNCERIKKYILIPPQRRSNN--FSNK 194

Query: 184 RIRHEYSCFNVY*YI 140
           +IR  ++ F +Y Y+
Sbjct: 195 QIRKIFAYFLIYFYL 209


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,415,512
Number of Sequences: 1657284
Number of extensions: 12721255
Number of successful extensions: 29058
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29054
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)