Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1249
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    28   1.2  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   5.0  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   8.8  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 424 MHHSNGRIINRVHVRGSHFTDIVFFFYYLTKANVIQCCHKNFGT--PPNV 281
           + H N +IIN   + GS +TDI +      KA  I    ++ GT  PP +
Sbjct: 52  LKHFNSKIINDHPLSGSCYTDIGYALINSRKACFILSYRQSLGTAEPPTI 101


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 408 PFE*CICKICFYGTTYWYF 464
           PFE  +C++C +    WYF
Sbjct: 178 PFETVLCRVCDHEIQNWYF 196


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 710 PFKSTCLFINRSYEELKKFDKSTNSSNK 627
           PFKS   + N +Y + +    STNS+ K
Sbjct: 151 PFKSLSQYWNAAYNKKESISSSTNSNIK 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,549
Number of Sequences: 5004
Number of extensions: 58859
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)